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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sar: Staphylococcus aureus MRSA252

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sar00010 Glycolysis / Gluconeogenesis SBML MML
sar00020 Citrate cycle (TCA cycle) SBML MML
sar00030 Pentose phosphate pathway SBML MML
sar00040 Pentose and glucuronate interconversions SBML MML
sar00051 Fructose and mannose metabolism SBML MML
sar00052 Galactose metabolism SBML MML
sar00053 Ascorbate and aldarate metabolism SBML MML
sar00061 Fatty acid biosynthesis SBML MML
sar00062 Fatty acid elongation in mitochondria SBML MML
sar00071 Fatty acid metabolism SBML MML
sar00072 Synthesis and degradation of ketone bodies SBML MML
sar00100 (Undocumented) SBML MML
sar00120 (Undocumented) SBML MML
sar00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sar00220 (Undocumented) SBML MML
sar00230 Purine metabolism SBML MML
sar00240 Pyrimidine metabolism SBML MML
sar00251 (Undocumented) SBML MML
sar00252 (Undocumented) SBML MML
sar00260 Glycine, serine and threonine metabolism SBML MML
sar00271 (Undocumented) SBML MML
sar00272 (Undocumented) SBML MML
sar00280 Valine, leucine and isoleucine degradation SBML MML
sar00281 Geraniol degradation SBML MML
sar00290 Valine, leucine and isoleucine biosynthesis SBML MML
sar00300 Lysine biosynthesis SBML MML
sar00310 Lysine degradation SBML MML
sar00330 Arginine and proline metabolism SBML MML
sar00340 Histidine metabolism SBML MML
sar00350 Tyrosine metabolism SBML MML
sar00360 Phenylalanine metabolism SBML MML
sar00362 (Undocumented) SBML MML
sar00380 Tryptophan metabolism SBML MML
sar00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sar00410 beta-Alanine metabolism SBML MML
sar00430 Taurine and hypotaurine metabolism SBML MML
sar00440 Phosphonate and phosphinate metabolism SBML MML
sar00450 Selenoamino acid metabolism SBML MML
sar00460 (Undocumented) SBML MML
sar00471 D-Glutamine and D-glutamate metabolism SBML MML
sar00472 D-Arginine and D-ornithine metabolism SBML MML
sar00473 D-Alanine metabolism SBML MML
sar00480 Glutathione metabolism SBML MML
sar00500 Starch and sucrose metabolism SBML MML
sar00510 (Undocumented) SBML MML
sar00520 Amino sugar and nucleotide sugar metabolism SBML MML
sar00521 Streptomycin biosynthesis SBML MML
sar00530 (Undocumented) SBML MML
sar00550 Peptidoglycan biosynthesis SBML MML
sar00561 Glycerolipid metabolism SBML MML
sar00562 Inositol phosphate metabolism SBML MML
sar00564 Glycerophospholipid metabolism SBML MML
sar00590 Arachidonic acid metabolism SBML MML
sar00592 alpha-Linolenic acid metabolism SBML MML
sar00620 Pyruvate metabolism SBML MML
sar00624 1- and 2-Methylnaphthalene degradation SBML MML
sar00630 Glyoxylate and dicarboxylate metabolism SBML MML
sar00632 (Undocumented) SBML MML
sar00640 Propanoate metabolism SBML MML
sar00641 3-Chloroacrylic acid degradation SBML MML
sar00642 Ethylbenzene degradation SBML MML
sar00650 Butanoate metabolism SBML MML
sar00660 C5-Branched dibasic acid metabolism SBML MML
sar00670 One carbon pool by folate SBML MML
sar00680 Methane metabolism SBML MML
sar00710 (Undocumented) SBML MML
sar00720 (Undocumented) SBML MML
sar00730 Thiamine metabolism SBML MML
sar00740 Riboflavin metabolism SBML MML
sar00750 Vitamin B6 metabolism SBML MML
sar00760 Nicotinate and nicotinamide metabolism SBML MML
sar00770 Pantothenate and CoA biosynthesis SBML MML
sar00780 Biotin metabolism SBML MML
sar00785 Lipoic acid metabolism SBML MML
sar00790 Folate biosynthesis SBML MML
sar00860 Porphyrin and chlorophyll metabolism SBML MML
sar00900 Terpenoid backbone biosynthesis SBML MML
sar00903 (Undocumented) SBML MML
sar00906 Carotenoid biosynthesis SBML MML
sar00910 Nitrogen metabolism SBML MML
sar00920 Sulfur metabolism SBML MML
sar00930 Caprolactam degradation SBML MML
sar00960 (Undocumented) SBML MML
sar00970 Aminoacyl-tRNA biosynthesis SBML MML
sar00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sar00982 (Undocumented) SBML MML
sar00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.