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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sau: Staphylococcus aureus N315

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sau00010 Glycolysis / Gluconeogenesis SBML MML
sau00020 Citrate cycle (TCA cycle) SBML MML
sau00030 Pentose phosphate pathway SBML MML
sau00040 Pentose and glucuronate interconversions SBML MML
sau00051 Fructose and mannose metabolism SBML MML
sau00052 Galactose metabolism SBML MML
sau00053 Ascorbate and aldarate metabolism SBML MML
sau00061 Fatty acid biosynthesis SBML MML
sau00062 Fatty acid elongation in mitochondria SBML MML
sau00071 Fatty acid metabolism SBML MML
sau00072 Synthesis and degradation of ketone bodies SBML MML
sau00100 (Undocumented) SBML MML
sau00120 (Undocumented) SBML MML
sau00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sau00220 (Undocumented) SBML MML
sau00230 Purine metabolism SBML MML
sau00240 Pyrimidine metabolism SBML MML
sau00251 (Undocumented) SBML MML
sau00252 (Undocumented) SBML MML
sau00260 Glycine, serine and threonine metabolism SBML MML
sau00271 (Undocumented) SBML MML
sau00272 (Undocumented) SBML MML
sau00280 Valine, leucine and isoleucine degradation SBML MML
sau00281 Geraniol degradation SBML MML
sau00290 Valine, leucine and isoleucine biosynthesis SBML MML
sau00300 Lysine biosynthesis SBML MML
sau00310 Lysine degradation SBML MML
sau00330 Arginine and proline metabolism SBML MML
sau00340 Histidine metabolism SBML MML
sau00350 Tyrosine metabolism SBML MML
sau00360 Phenylalanine metabolism SBML MML
sau00362 (Undocumented) SBML MML
sau00380 Tryptophan metabolism SBML MML
sau00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sau00410 beta-Alanine metabolism SBML MML
sau00430 Taurine and hypotaurine metabolism SBML MML
sau00440 Phosphonate and phosphinate metabolism SBML MML
sau00450 Selenoamino acid metabolism SBML MML
sau00460 (Undocumented) SBML MML
sau00471 D-Glutamine and D-glutamate metabolism SBML MML
sau00472 D-Arginine and D-ornithine metabolism SBML MML
sau00473 D-Alanine metabolism SBML MML
sau00480 Glutathione metabolism SBML MML
sau00500 Starch and sucrose metabolism SBML MML
sau00510 (Undocumented) SBML MML
sau00520 Amino sugar and nucleotide sugar metabolism SBML MML
sau00521 Streptomycin biosynthesis SBML MML
sau00530 (Undocumented) SBML MML
sau00550 Peptidoglycan biosynthesis SBML MML
sau00561 Glycerolipid metabolism SBML MML
sau00562 Inositol phosphate metabolism SBML MML
sau00564 Glycerophospholipid metabolism SBML MML
sau00590 Arachidonic acid metabolism SBML MML
sau00592 alpha-Linolenic acid metabolism SBML MML
sau00620 Pyruvate metabolism SBML MML
sau00624 1- and 2-Methylnaphthalene degradation SBML MML
sau00630 Glyoxylate and dicarboxylate metabolism SBML MML
sau00632 (Undocumented) SBML MML
sau00640 Propanoate metabolism SBML MML
sau00641 3-Chloroacrylic acid degradation SBML MML
sau00642 Ethylbenzene degradation SBML MML
sau00650 Butanoate metabolism SBML MML
sau00660 C5-Branched dibasic acid metabolism SBML MML
sau00670 One carbon pool by folate SBML MML
sau00680 Methane metabolism SBML MML
sau00710 (Undocumented) SBML MML
sau00720 (Undocumented) SBML MML
sau00730 Thiamine metabolism SBML MML
sau00740 Riboflavin metabolism SBML MML
sau00750 Vitamin B6 metabolism SBML MML
sau00760 Nicotinate and nicotinamide metabolism SBML MML
sau00770 Pantothenate and CoA biosynthesis SBML MML
sau00780 Biotin metabolism SBML MML
sau00785 Lipoic acid metabolism SBML MML
sau00790 Folate biosynthesis SBML MML
sau00860 Porphyrin and chlorophyll metabolism SBML MML
sau00900 Terpenoid backbone biosynthesis SBML MML
sau00903 (Undocumented) SBML MML
sau00906 Carotenoid biosynthesis SBML MML
sau00910 Nitrogen metabolism SBML MML
sau00920 Sulfur metabolism SBML MML
sau00930 Caprolactam degradation SBML MML
sau00960 (Undocumented) SBML MML
sau00970 Aminoacyl-tRNA biosynthesis SBML MML
sau00982 (Undocumented) SBML MML
sau00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.