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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism saw: Staphylococcus aureus Mu3

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
saw00010 Glycolysis / Gluconeogenesis SBML MML
saw00020 Citrate cycle (TCA cycle) SBML MML
saw00030 Pentose phosphate pathway SBML MML
saw00040 Pentose and glucuronate interconversions SBML MML
saw00051 Fructose and mannose metabolism SBML MML
saw00052 Galactose metabolism SBML MML
saw00053 Ascorbate and aldarate metabolism SBML MML
saw00061 Fatty acid biosynthesis SBML MML
saw00062 Fatty acid elongation in mitochondria SBML MML
saw00071 Fatty acid metabolism SBML MML
saw00072 Synthesis and degradation of ketone bodies SBML MML
saw00100 (Undocumented) SBML MML
saw00120 (Undocumented) SBML MML
saw00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
saw00150 Androgen and estrogen metabolism SBML MML
saw00220 (Undocumented) SBML MML
saw00230 Purine metabolism SBML MML
saw00240 Pyrimidine metabolism SBML MML
saw00251 (Undocumented) SBML MML
saw00252 (Undocumented) SBML MML
saw00260 Glycine, serine and threonine metabolism SBML MML
saw00271 (Undocumented) SBML MML
saw00272 (Undocumented) SBML MML
saw00280 Valine, leucine and isoleucine degradation SBML MML
saw00281 Geraniol degradation SBML MML
saw00290 Valine, leucine and isoleucine biosynthesis SBML MML
saw00300 Lysine biosynthesis SBML MML
saw00310 Lysine degradation SBML MML
saw00330 Arginine and proline metabolism SBML MML
saw00340 Histidine metabolism SBML MML
saw00350 Tyrosine metabolism SBML MML
saw00360 Phenylalanine metabolism SBML MML
saw00361 gamma-Hexachlorocyclohexane degradation SBML MML
saw00362 (Undocumented) SBML MML
saw00363 Bisphenol A degradation SBML MML
saw00380 Tryptophan metabolism SBML MML
saw00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
saw00410 beta-Alanine metabolism SBML MML
saw00430 Taurine and hypotaurine metabolism SBML MML
saw00450 Selenoamino acid metabolism SBML MML
saw00460 (Undocumented) SBML MML
saw00471 D-Glutamine and D-glutamate metabolism SBML MML
saw00472 D-Arginine and D-ornithine metabolism SBML MML
saw00473 D-Alanine metabolism SBML MML
saw00480 Glutathione metabolism SBML MML
saw00500 Starch and sucrose metabolism SBML MML
saw00510 (Undocumented) SBML MML
saw00520 Amino sugar and nucleotide sugar metabolism SBML MML
saw00521 Streptomycin biosynthesis SBML MML
saw00530 (Undocumented) SBML MML
saw00550 Peptidoglycan biosynthesis SBML MML
saw00561 Glycerolipid metabolism SBML MML
saw00562 Inositol phosphate metabolism SBML MML
saw00564 Glycerophospholipid metabolism SBML MML
saw00565 Ether lipid metabolism SBML MML
saw00590 Arachidonic acid metabolism SBML MML
saw00592 alpha-Linolenic acid metabolism SBML MML
saw00620 Pyruvate metabolism SBML MML
saw00622 Toluene and xylene degradation SBML MML
saw00624 1- and 2-Methylnaphthalene degradation SBML MML
saw00626 Naphthalene and anthracene degradation SBML MML
saw00627 1,4-Dichlorobenzene degradation SBML MML
saw00630 Glyoxylate and dicarboxylate metabolism SBML MML
saw00632 (Undocumented) SBML MML
saw00640 Propanoate metabolism SBML MML
saw00641 3-Chloroacrylic acid degradation SBML MML
saw00642 Ethylbenzene degradation SBML MML
saw00650 Butanoate metabolism SBML MML
saw00660 C5-Branched dibasic acid metabolism SBML MML
saw00670 One carbon pool by folate SBML MML
saw00680 Methane metabolism SBML MML
saw00710 (Undocumented) SBML MML
saw00720 (Undocumented) SBML MML
saw00730 Thiamine metabolism SBML MML
saw00740 Riboflavin metabolism SBML MML
saw00750 Vitamin B6 metabolism SBML MML
saw00760 Nicotinate and nicotinamide metabolism SBML MML
saw00770 Pantothenate and CoA biosynthesis SBML MML
saw00780 Biotin metabolism SBML MML
saw00785 Lipoic acid metabolism SBML MML
saw00790 Folate biosynthesis SBML MML
saw00860 Porphyrin and chlorophyll metabolism SBML MML
saw00900 Terpenoid backbone biosynthesis SBML MML
saw00903 (Undocumented) SBML MML
saw00906 Carotenoid biosynthesis SBML MML
saw00910 Nitrogen metabolism SBML MML
saw00920 Sulfur metabolism SBML MML
saw00930 Caprolactam degradation SBML MML
saw00960 (Undocumented) SBML MML
saw00970 Aminoacyl-tRNA biosynthesis SBML MML
saw00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
saw00982 (Undocumented) SBML MML
saw00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.