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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sde: Saccharophagus degradans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sde00010 Glycolysis / Gluconeogenesis SBML MML
sde00020 Citrate cycle (TCA cycle) SBML MML
sde00030 Pentose phosphate pathway SBML MML
sde00040 Pentose and glucuronate interconversions SBML MML
sde00051 Fructose and mannose metabolism SBML MML
sde00052 Galactose metabolism SBML MML
sde00061 Fatty acid biosynthesis SBML MML
sde00062 Fatty acid elongation in mitochondria SBML MML
sde00071 Fatty acid metabolism SBML MML
sde00100 (Undocumented) SBML MML
sde00120 (Undocumented) SBML MML
sde00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sde00220 (Undocumented) SBML MML
sde00230 Purine metabolism SBML MML
sde00240 Pyrimidine metabolism SBML MML
sde00251 (Undocumented) SBML MML
sde00252 (Undocumented) SBML MML
sde00260 Glycine, serine and threonine metabolism SBML MML
sde00271 (Undocumented) SBML MML
sde00272 (Undocumented) SBML MML
sde00280 Valine, leucine and isoleucine degradation SBML MML
sde00281 Geraniol degradation SBML MML
sde00290 Valine, leucine and isoleucine biosynthesis SBML MML
sde00300 Lysine biosynthesis SBML MML
sde00310 Lysine degradation SBML MML
sde00330 Arginine and proline metabolism SBML MML
sde00340 Histidine metabolism SBML MML
sde00350 Tyrosine metabolism SBML MML
sde00360 Phenylalanine metabolism SBML MML
sde00362 (Undocumented) SBML MML
sde00380 Tryptophan metabolism SBML MML
sde00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sde00401 Novobiocin biosynthesis SBML MML
sde00410 beta-Alanine metabolism SBML MML
sde00450 Selenoamino acid metabolism SBML MML
sde00460 (Undocumented) SBML MML
sde00471 D-Glutamine and D-glutamate metabolism SBML MML
sde00473 D-Alanine metabolism SBML MML
sde00480 Glutathione metabolism SBML MML
sde00500 Starch and sucrose metabolism SBML MML
sde00520 Amino sugar and nucleotide sugar metabolism SBML MML
sde00521 Streptomycin biosynthesis SBML MML
sde00523 Polyketide sugar unit biosynthesis SBML MML
sde00530 (Undocumented) SBML MML
sde00540 Lipopolysaccharide biosynthesis SBML MML
sde00550 Peptidoglycan biosynthesis SBML MML
sde00561 Glycerolipid metabolism SBML MML
sde00562 Inositol phosphate metabolism SBML MML
sde00564 Glycerophospholipid metabolism SBML MML
sde00590 Arachidonic acid metabolism SBML MML
sde00592 alpha-Linolenic acid metabolism SBML MML
sde00600 Sphingolipid metabolism SBML MML
sde00620 Pyruvate metabolism SBML MML
sde00630 Glyoxylate and dicarboxylate metabolism SBML MML
sde00632 (Undocumented) SBML MML
sde00640 Propanoate metabolism SBML MML
sde00650 Butanoate metabolism SBML MML
sde00660 C5-Branched dibasic acid metabolism SBML MML
sde00670 One carbon pool by folate SBML MML
sde00680 Methane metabolism SBML MML
sde00710 (Undocumented) SBML MML
sde00720 (Undocumented) SBML MML
sde00730 Thiamine metabolism SBML MML
sde00740 Riboflavin metabolism SBML MML
sde00750 Vitamin B6 metabolism SBML MML
sde00760 Nicotinate and nicotinamide metabolism SBML MML
sde00770 Pantothenate and CoA biosynthesis SBML MML
sde00780 Biotin metabolism SBML MML
sde00785 Lipoic acid metabolism SBML MML
sde00790 Folate biosynthesis SBML MML
sde00860 Porphyrin and chlorophyll metabolism SBML MML
sde00900 Terpenoid backbone biosynthesis SBML MML
sde00903 (Undocumented) SBML MML
sde00910 Nitrogen metabolism SBML MML
sde00920 Sulfur metabolism SBML MML
sde00930 Caprolactam degradation SBML MML
sde00940 (Undocumented) SBML MML
sde00950 (Undocumented) SBML MML
sde00960 (Undocumented) SBML MML
sde00970 Aminoacyl-tRNA biosynthesis SBML MML
sde00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sde00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.