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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spl: Shewanella pealeana

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spl00010 Glycolysis / Gluconeogenesis SBML MML
spl00020 Citrate cycle (TCA cycle) SBML MML
spl00030 Pentose phosphate pathway SBML MML
spl00031 (Undocumented) SBML MML
spl00040 Pentose and glucuronate interconversions SBML MML
spl00051 Fructose and mannose metabolism SBML MML
spl00052 Galactose metabolism SBML MML
spl00053 Ascorbate and aldarate metabolism SBML MML
spl00061 Fatty acid biosynthesis SBML MML
spl00071 Fatty acid metabolism SBML MML
spl00072 Synthesis and degradation of ketone bodies SBML MML
spl00100 (Undocumented) SBML MML
spl00120 (Undocumented) SBML MML
spl00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
spl00150 Androgen and estrogen metabolism SBML MML
spl00220 (Undocumented) SBML MML
spl00230 Purine metabolism SBML MML
spl00240 Pyrimidine metabolism SBML MML
spl00251 (Undocumented) SBML MML
spl00252 (Undocumented) SBML MML
spl00260 Glycine, serine and threonine metabolism SBML MML
spl00271 (Undocumented) SBML MML
spl00272 (Undocumented) SBML MML
spl00280 Valine, leucine and isoleucine degradation SBML MML
spl00281 Geraniol degradation SBML MML
spl00290 Valine, leucine and isoleucine biosynthesis SBML MML
spl00300 Lysine biosynthesis SBML MML
spl00310 Lysine degradation SBML MML
spl00311 Penicillin and cephalosporin biosynthesis SBML MML
spl00330 Arginine and proline metabolism SBML MML
spl00340 Histidine metabolism SBML MML
spl00350 Tyrosine metabolism SBML MML
spl00360 Phenylalanine metabolism SBML MML
spl00361 gamma-Hexachlorocyclohexane degradation SBML MML
spl00362 (Undocumented) SBML MML
spl00363 Bisphenol A degradation SBML MML
spl00364 Fluorobenzoate degradation SBML MML
spl00380 Tryptophan metabolism SBML MML
spl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spl00401 Novobiocin biosynthesis SBML MML
spl00410 beta-Alanine metabolism SBML MML
spl00430 Taurine and hypotaurine metabolism SBML MML
spl00450 Selenoamino acid metabolism SBML MML
spl00460 (Undocumented) SBML MML
spl00471 D-Glutamine and D-glutamate metabolism SBML MML
spl00473 D-Alanine metabolism SBML MML
spl00480 Glutathione metabolism SBML MML
spl00500 Starch and sucrose metabolism SBML MML
spl00520 Amino sugar and nucleotide sugar metabolism SBML MML
spl00521 Streptomycin biosynthesis SBML MML
spl00523 Polyketide sugar unit biosynthesis SBML MML
spl00530 (Undocumented) SBML MML
spl00540 Lipopolysaccharide biosynthesis SBML MML
spl00550 Peptidoglycan biosynthesis SBML MML
spl00561 Glycerolipid metabolism SBML MML
spl00562 Inositol phosphate metabolism SBML MML
spl00564 Glycerophospholipid metabolism SBML MML
spl00590 Arachidonic acid metabolism SBML MML
spl00592 alpha-Linolenic acid metabolism SBML MML
spl00600 Sphingolipid metabolism SBML MML
spl00620 Pyruvate metabolism SBML MML
spl00621 (Undocumented) SBML MML
spl00622 Toluene and xylene degradation SBML MML
spl00623 2,4-Dichlorobenzoate degradation SBML MML
spl00624 1- and 2-Methylnaphthalene degradation SBML MML
spl00626 Naphthalene and anthracene degradation SBML MML
spl00627 1,4-Dichlorobenzene degradation SBML MML
spl00628 Fluorene degradation SBML MML
spl00629 Carbazole degradation SBML MML
spl00630 Glyoxylate and dicarboxylate metabolism SBML MML
spl00631 1,2-Dichloroethane degradation SBML MML
spl00632 (Undocumented) SBML MML
spl00633 Trinitrotoluene degradation SBML MML
spl00640 Propanoate metabolism SBML MML
spl00641 3-Chloroacrylic acid degradation SBML MML
spl00642 Ethylbenzene degradation SBML MML
spl00643 Styrene degradation SBML MML
spl00650 Butanoate metabolism SBML MML
spl00660 C5-Branched dibasic acid metabolism SBML MML
spl00670 One carbon pool by folate SBML MML
spl00680 Methane metabolism SBML MML
spl00710 (Undocumented) SBML MML
spl00720 (Undocumented) SBML MML
spl00730 Thiamine metabolism SBML MML
spl00740 Riboflavin metabolism SBML MML
spl00750 Vitamin B6 metabolism SBML MML
spl00760 Nicotinate and nicotinamide metabolism SBML MML
spl00770 Pantothenate and CoA biosynthesis SBML MML
spl00780 Biotin metabolism SBML MML
spl00790 Folate biosynthesis SBML MML
spl00791 Atrazine degradation SBML MML
spl00860 Porphyrin and chlorophyll metabolism SBML MML
spl00900 Terpenoid backbone biosynthesis SBML MML
spl00903 (Undocumented) SBML MML
spl00910 Nitrogen metabolism SBML MML
spl00920 Sulfur metabolism SBML MML
spl00930 Caprolactam degradation SBML MML
spl00940 (Undocumented) SBML MML
spl00941 (Undocumented) SBML MML
spl00950 (Undocumented) SBML MML
spl00960 (Undocumented) SBML MML
spl00970 Aminoacyl-tRNA biosynthesis SBML MML
spl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
spl00982 (Undocumented) SBML MML
spl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.