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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism stl: Streptococcus thermophilus LMG18311

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
stl00010 Glycolysis / Gluconeogenesis SBML MML
stl00020 Citrate cycle (TCA cycle) SBML MML
stl00030 Pentose phosphate pathway SBML MML
stl00040 Pentose and glucuronate interconversions SBML MML
stl00051 Fructose and mannose metabolism SBML MML
stl00052 Galactose metabolism SBML MML
stl00061 Fatty acid biosynthesis SBML MML
stl00071 Fatty acid metabolism SBML MML
stl00100 (Undocumented) SBML MML
stl00220 (Undocumented) SBML MML
stl00230 Purine metabolism SBML MML
stl00240 Pyrimidine metabolism SBML MML
stl00251 (Undocumented) SBML MML
stl00252 (Undocumented) SBML MML
stl00260 Glycine, serine and threonine metabolism SBML MML
stl00271 (Undocumented) SBML MML
stl00272 (Undocumented) SBML MML
stl00280 Valine, leucine and isoleucine degradation SBML MML
stl00290 Valine, leucine and isoleucine biosynthesis SBML MML
stl00300 Lysine biosynthesis SBML MML
stl00330 Arginine and proline metabolism SBML MML
stl00340 Histidine metabolism SBML MML
stl00350 Tyrosine metabolism SBML MML
stl00380 Tryptophan metabolism SBML MML
stl00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
stl00430 Taurine and hypotaurine metabolism SBML MML
stl00440 Phosphonate and phosphinate metabolism SBML MML
stl00450 Selenoamino acid metabolism SBML MML
stl00460 (Undocumented) SBML MML
stl00471 D-Glutamine and D-glutamate metabolism SBML MML
stl00473 D-Alanine metabolism SBML MML
stl00480 Glutathione metabolism SBML MML
stl00500 Starch and sucrose metabolism SBML MML
stl00520 Amino sugar and nucleotide sugar metabolism SBML MML
stl00521 Streptomycin biosynthesis SBML MML
stl00523 Polyketide sugar unit biosynthesis SBML MML
stl00530 (Undocumented) SBML MML
stl00550 Peptidoglycan biosynthesis SBML MML
stl00561 Glycerolipid metabolism SBML MML
stl00562 Inositol phosphate metabolism SBML MML
stl00564 Glycerophospholipid metabolism SBML MML
stl00620 Pyruvate metabolism SBML MML
stl00624 1- and 2-Methylnaphthalene degradation SBML MML
stl00630 Glyoxylate and dicarboxylate metabolism SBML MML
stl00632 (Undocumented) SBML MML
stl00640 Propanoate metabolism SBML MML
stl00641 3-Chloroacrylic acid degradation SBML MML
stl00650 Butanoate metabolism SBML MML
stl00660 C5-Branched dibasic acid metabolism SBML MML
stl00670 One carbon pool by folate SBML MML
stl00680 Methane metabolism SBML MML
stl00710 (Undocumented) SBML MML
stl00720 (Undocumented) SBML MML
stl00730 Thiamine metabolism SBML MML
stl00740 Riboflavin metabolism SBML MML
stl00750 Vitamin B6 metabolism SBML MML
stl00760 Nicotinate and nicotinamide metabolism SBML MML
stl00770 Pantothenate and CoA biosynthesis SBML MML
stl00780 Biotin metabolism SBML MML
stl00785 Lipoic acid metabolism SBML MML
stl00790 Folate biosynthesis SBML MML
stl00860 Porphyrin and chlorophyll metabolism SBML MML
stl00900 Terpenoid backbone biosynthesis SBML MML
stl00903 (Undocumented) SBML MML
stl00910 Nitrogen metabolism SBML MML
stl00920 Sulfur metabolism SBML MML
stl00970 Aminoacyl-tRNA biosynthesis SBML MML
stl00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
stl00982 (Undocumented) SBML MML
stl00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.