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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sto: Sulfolobus tokodaii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sto00010 Glycolysis / Gluconeogenesis SBML MML
sto00020 Citrate cycle (TCA cycle) SBML MML
sto00030 Pentose phosphate pathway SBML MML
sto00031 (Undocumented) SBML MML
sto00051 Fructose and mannose metabolism SBML MML
sto00052 Galactose metabolism SBML MML
sto00061 Fatty acid biosynthesis SBML MML
sto00062 Fatty acid elongation in mitochondria SBML MML
sto00071 Fatty acid metabolism SBML MML
sto00100 (Undocumented) SBML MML
sto00120 (Undocumented) SBML MML
sto00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sto00220 (Undocumented) SBML MML
sto00230 Purine metabolism SBML MML
sto00240 Pyrimidine metabolism SBML MML
sto00251 (Undocumented) SBML MML
sto00252 (Undocumented) SBML MML
sto00260 Glycine, serine and threonine metabolism SBML MML
sto00271 (Undocumented) SBML MML
sto00272 (Undocumented) SBML MML
sto00280 Valine, leucine and isoleucine degradation SBML MML
sto00281 Geraniol degradation SBML MML
sto00290 Valine, leucine and isoleucine biosynthesis SBML MML
sto00300 Lysine biosynthesis SBML MML
sto00310 Lysine degradation SBML MML
sto00330 Arginine and proline metabolism SBML MML
sto00340 Histidine metabolism SBML MML
sto00350 Tyrosine metabolism SBML MML
sto00360 Phenylalanine metabolism SBML MML
sto00361 gamma-Hexachlorocyclohexane degradation SBML MML
sto00362 (Undocumented) SBML MML
sto00364 Fluorobenzoate degradation SBML MML
sto00380 Tryptophan metabolism SBML MML
sto00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sto00401 Novobiocin biosynthesis SBML MML
sto00410 beta-Alanine metabolism SBML MML
sto00450 Selenoamino acid metabolism SBML MML
sto00460 (Undocumented) SBML MML
sto00480 Glutathione metabolism SBML MML
sto00500 Starch and sucrose metabolism SBML MML
sto00510 (Undocumented) SBML MML
sto00520 Amino sugar and nucleotide sugar metabolism SBML MML
sto00521 Streptomycin biosynthesis SBML MML
sto00523 Polyketide sugar unit biosynthesis SBML MML
sto00530 (Undocumented) SBML MML
sto00550 Peptidoglycan biosynthesis SBML MML
sto00561 Glycerolipid metabolism SBML MML
sto00562 Inositol phosphate metabolism SBML MML
sto00564 Glycerophospholipid metabolism SBML MML
sto00592 alpha-Linolenic acid metabolism SBML MML
sto00620 Pyruvate metabolism SBML MML
sto00622 Toluene and xylene degradation SBML MML
sto00624 1- and 2-Methylnaphthalene degradation SBML MML
sto00626 Naphthalene and anthracene degradation SBML MML
sto00627 1,4-Dichlorobenzene degradation SBML MML
sto00630 Glyoxylate and dicarboxylate metabolism SBML MML
sto00631 1,2-Dichloroethane degradation SBML MML
sto00632 (Undocumented) SBML MML
sto00640 Propanoate metabolism SBML MML
sto00641 3-Chloroacrylic acid degradation SBML MML
sto00643 Styrene degradation SBML MML
sto00650 Butanoate metabolism SBML MML
sto00660 C5-Branched dibasic acid metabolism SBML MML
sto00670 One carbon pool by folate SBML MML
sto00680 Methane metabolism SBML MML
sto00710 (Undocumented) SBML MML
sto00720 (Undocumented) SBML MML
sto00730 Thiamine metabolism SBML MML
sto00740 Riboflavin metabolism SBML MML
sto00750 Vitamin B6 metabolism SBML MML
sto00760 Nicotinate and nicotinamide metabolism SBML MML
sto00770 Pantothenate and CoA biosynthesis SBML MML
sto00780 Biotin metabolism SBML MML
sto00785 Lipoic acid metabolism SBML MML
sto00790 Folate biosynthesis SBML MML
sto00860 Porphyrin and chlorophyll metabolism SBML MML
sto00900 Terpenoid backbone biosynthesis SBML MML
sto00903 (Undocumented) SBML MML
sto00910 Nitrogen metabolism SBML MML
sto00920 Sulfur metabolism SBML MML
sto00930 Caprolactam degradation SBML MML
sto00970 Aminoacyl-tRNA biosynthesis SBML MML
sto00982 (Undocumented) SBML MML
sto00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.