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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sus: Solibacter usitatus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sus00010 Glycolysis / Gluconeogenesis SBML MML
sus00020 Citrate cycle (TCA cycle) SBML MML
sus00030 Pentose phosphate pathway SBML MML
sus00031 (Undocumented) SBML MML
sus00040 Pentose and glucuronate interconversions SBML MML
sus00051 Fructose and mannose metabolism SBML MML
sus00052 Galactose metabolism SBML MML
sus00053 Ascorbate and aldarate metabolism SBML MML
sus00061 Fatty acid biosynthesis SBML MML
sus00062 Fatty acid elongation in mitochondria SBML MML
sus00071 Fatty acid metabolism SBML MML
sus00100 (Undocumented) SBML MML
sus00120 (Undocumented) SBML MML
sus00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sus00220 (Undocumented) SBML MML
sus00230 Purine metabolism SBML MML
sus00232 Caffeine metabolism SBML MML
sus00240 Pyrimidine metabolism SBML MML
sus00251 (Undocumented) SBML MML
sus00252 (Undocumented) SBML MML
sus00260 Glycine, serine and threonine metabolism SBML MML
sus00271 (Undocumented) SBML MML
sus00272 (Undocumented) SBML MML
sus00280 Valine, leucine and isoleucine degradation SBML MML
sus00281 Geraniol degradation SBML MML
sus00290 Valine, leucine and isoleucine biosynthesis SBML MML
sus00300 Lysine biosynthesis SBML MML
sus00310 Lysine degradation SBML MML
sus00311 Penicillin and cephalosporin biosynthesis SBML MML
sus00330 Arginine and proline metabolism SBML MML
sus00340 Histidine metabolism SBML MML
sus00350 Tyrosine metabolism SBML MML
sus00360 Phenylalanine metabolism SBML MML
sus00361 gamma-Hexachlorocyclohexane degradation SBML MML
sus00362 (Undocumented) SBML MML
sus00364 Fluorobenzoate degradation SBML MML
sus00380 Tryptophan metabolism SBML MML
sus00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sus00401 Novobiocin biosynthesis SBML MML
sus00410 beta-Alanine metabolism SBML MML
sus00430 Taurine and hypotaurine metabolism SBML MML
sus00450 Selenoamino acid metabolism SBML MML
sus00460 (Undocumented) SBML MML
sus00471 D-Glutamine and D-glutamate metabolism SBML MML
sus00473 D-Alanine metabolism SBML MML
sus00480 Glutathione metabolism SBML MML
sus00500 Starch and sucrose metabolism SBML MML
sus00520 Amino sugar and nucleotide sugar metabolism SBML MML
sus00521 Streptomycin biosynthesis SBML MML
sus00523 Polyketide sugar unit biosynthesis SBML MML
sus00530 (Undocumented) SBML MML
sus00540 Lipopolysaccharide biosynthesis SBML MML
sus00550 Peptidoglycan biosynthesis SBML MML
sus00561 Glycerolipid metabolism SBML MML
sus00562 Inositol phosphate metabolism SBML MML
sus00564 Glycerophospholipid metabolism SBML MML
sus00565 Ether lipid metabolism SBML MML
sus00590 Arachidonic acid metabolism SBML MML
sus00592 alpha-Linolenic acid metabolism SBML MML
sus00600 Sphingolipid metabolism SBML MML
sus00620 Pyruvate metabolism SBML MML
sus00623 2,4-Dichlorobenzoate degradation SBML MML
sus00624 1- and 2-Methylnaphthalene degradation SBML MML
sus00627 1,4-Dichlorobenzene degradation SBML MML
sus00630 Glyoxylate and dicarboxylate metabolism SBML MML
sus00631 1,2-Dichloroethane degradation SBML MML
sus00632 (Undocumented) SBML MML
sus00640 Propanoate metabolism SBML MML
sus00641 3-Chloroacrylic acid degradation SBML MML
sus00642 Ethylbenzene degradation SBML MML
sus00643 Styrene degradation SBML MML
sus00650 Butanoate metabolism SBML MML
sus00660 C5-Branched dibasic acid metabolism SBML MML
sus00670 One carbon pool by folate SBML MML
sus00680 Methane metabolism SBML MML
sus00710 (Undocumented) SBML MML
sus00720 (Undocumented) SBML MML
sus00730 Thiamine metabolism SBML MML
sus00740 Riboflavin metabolism SBML MML
sus00750 Vitamin B6 metabolism SBML MML
sus00760 Nicotinate and nicotinamide metabolism SBML MML
sus00770 Pantothenate and CoA biosynthesis SBML MML
sus00785 Lipoic acid metabolism SBML MML
sus00790 Folate biosynthesis SBML MML
sus00791 Atrazine degradation SBML MML
sus00860 Porphyrin and chlorophyll metabolism SBML MML
sus00900 Terpenoid backbone biosynthesis SBML MML
sus00903 (Undocumented) SBML MML
sus00910 Nitrogen metabolism SBML MML
sus00920 Sulfur metabolism SBML MML
sus00930 Caprolactam degradation SBML MML
sus00940 (Undocumented) SBML MML
sus00950 (Undocumented) SBML MML
sus00960 (Undocumented) SBML MML
sus00970 Aminoacyl-tRNA biosynthesis SBML MML
sus00982 (Undocumented) SBML MML
sus00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.