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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syf: Synechococcus elongatus PCC7942

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syf00010 Glycolysis / Gluconeogenesis SBML MML
syf00020 Citrate cycle (TCA cycle) SBML MML
syf00030 Pentose phosphate pathway SBML MML
syf00040 Pentose and glucuronate interconversions SBML MML
syf00051 Fructose and mannose metabolism SBML MML
syf00052 Galactose metabolism SBML MML
syf00053 Ascorbate and aldarate metabolism SBML MML
syf00061 Fatty acid biosynthesis SBML MML
syf00071 Fatty acid metabolism SBML MML
syf00100 (Undocumented) SBML MML
syf00120 (Undocumented) SBML MML
syf00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syf00220 (Undocumented) SBML MML
syf00230 Purine metabolism SBML MML
syf00240 Pyrimidine metabolism SBML MML
syf00251 (Undocumented) SBML MML
syf00252 (Undocumented) SBML MML
syf00260 Glycine, serine and threonine metabolism SBML MML
syf00271 (Undocumented) SBML MML
syf00272 (Undocumented) SBML MML
syf00280 Valine, leucine and isoleucine degradation SBML MML
syf00290 Valine, leucine and isoleucine biosynthesis SBML MML
syf00300 Lysine biosynthesis SBML MML
syf00310 Lysine degradation SBML MML
syf00311 Penicillin and cephalosporin biosynthesis SBML MML
syf00330 Arginine and proline metabolism SBML MML
syf00340 Histidine metabolism SBML MML
syf00350 Tyrosine metabolism SBML MML
syf00360 Phenylalanine metabolism SBML MML
syf00361 gamma-Hexachlorocyclohexane degradation SBML MML
syf00364 Fluorobenzoate degradation SBML MML
syf00380 Tryptophan metabolism SBML MML
syf00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syf00401 Novobiocin biosynthesis SBML MML
syf00410 beta-Alanine metabolism SBML MML
syf00430 Taurine and hypotaurine metabolism SBML MML
syf00450 Selenoamino acid metabolism SBML MML
syf00460 (Undocumented) SBML MML
syf00471 D-Glutamine and D-glutamate metabolism SBML MML
syf00473 D-Alanine metabolism SBML MML
syf00480 Glutathione metabolism SBML MML
syf00500 Starch and sucrose metabolism SBML MML
syf00510 (Undocumented) SBML MML
syf00520 Amino sugar and nucleotide sugar metabolism SBML MML
syf00521 Streptomycin biosynthesis SBML MML
syf00523 Polyketide sugar unit biosynthesis SBML MML
syf00530 (Undocumented) SBML MML
syf00540 Lipopolysaccharide biosynthesis SBML MML
syf00550 Peptidoglycan biosynthesis SBML MML
syf00561 Glycerolipid metabolism SBML MML
syf00562 Inositol phosphate metabolism SBML MML
syf00564 Glycerophospholipid metabolism SBML MML
syf00590 Arachidonic acid metabolism SBML MML
syf00620 Pyruvate metabolism SBML MML
syf00624 1- and 2-Methylnaphthalene degradation SBML MML
syf00626 Naphthalene and anthracene degradation SBML MML
syf00627 1,4-Dichlorobenzene degradation SBML MML
syf00630 Glyoxylate and dicarboxylate metabolism SBML MML
syf00631 1,2-Dichloroethane degradation SBML MML
syf00632 (Undocumented) SBML MML
syf00633 Trinitrotoluene degradation SBML MML
syf00640 Propanoate metabolism SBML MML
syf00641 3-Chloroacrylic acid degradation SBML MML
syf00650 Butanoate metabolism SBML MML
syf00670 One carbon pool by folate SBML MML
syf00680 Methane metabolism SBML MML
syf00710 (Undocumented) SBML MML
syf00720 (Undocumented) SBML MML
syf00730 Thiamine metabolism SBML MML
syf00740 Riboflavin metabolism SBML MML
syf00750 Vitamin B6 metabolism SBML MML
syf00760 Nicotinate and nicotinamide metabolism SBML MML
syf00770 Pantothenate and CoA biosynthesis SBML MML
syf00780 Biotin metabolism SBML MML
syf00785 Lipoic acid metabolism SBML MML
syf00790 Folate biosynthesis SBML MML
syf00791 Atrazine degradation SBML MML
syf00860 Porphyrin and chlorophyll metabolism SBML MML
syf00900 Terpenoid backbone biosynthesis SBML MML
syf00903 (Undocumented) SBML MML
syf00906 Carotenoid biosynthesis SBML MML
syf00910 Nitrogen metabolism SBML MML
syf00920 Sulfur metabolism SBML MML
syf00940 (Undocumented) SBML MML
syf00970 Aminoacyl-tRNA biosynthesis SBML MML
syf00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syf00982 (Undocumented) SBML MML
syf00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.