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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tbr: Trypanosoma brucei

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tbr00010 Glycolysis / Gluconeogenesis SBML MML
tbr00020 Citrate cycle (TCA cycle) SBML MML
tbr00030 Pentose phosphate pathway SBML MML
tbr00040 Pentose and glucuronate interconversions SBML MML
tbr00051 Fructose and mannose metabolism SBML MML
tbr00052 Galactose metabolism SBML MML
tbr00053 Ascorbate and aldarate metabolism SBML MML
tbr00061 Fatty acid biosynthesis SBML MML
tbr00062 Fatty acid elongation in mitochondria SBML MML
tbr00071 Fatty acid metabolism SBML MML
tbr00072 Synthesis and degradation of ketone bodies SBML MML
tbr00100 (Undocumented) SBML MML
tbr00120 (Undocumented) SBML MML
tbr00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tbr00150 Androgen and estrogen metabolism SBML MML
tbr00220 (Undocumented) SBML MML
tbr00230 Purine metabolism SBML MML
tbr00240 Pyrimidine metabolism SBML MML
tbr00251 (Undocumented) SBML MML
tbr00252 (Undocumented) SBML MML
tbr00260 Glycine, serine and threonine metabolism SBML MML
tbr00271 (Undocumented) SBML MML
tbr00272 (Undocumented) SBML MML
tbr00280 Valine, leucine and isoleucine degradation SBML MML
tbr00281 Geraniol degradation SBML MML
tbr00290 Valine, leucine and isoleucine biosynthesis SBML MML
tbr00310 Lysine degradation SBML MML
tbr00330 Arginine and proline metabolism SBML MML
tbr00340 Histidine metabolism SBML MML
tbr00350 Tyrosine metabolism SBML MML
tbr00360 Phenylalanine metabolism SBML MML
tbr00361 gamma-Hexachlorocyclohexane degradation SBML MML
tbr00363 Bisphenol A degradation SBML MML
tbr00380 Tryptophan metabolism SBML MML
tbr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tbr00410 beta-Alanine metabolism SBML MML
tbr00440 Phosphonate and phosphinate metabolism SBML MML
tbr00450 Selenoamino acid metabolism SBML MML
tbr00460 (Undocumented) SBML MML
tbr00480 Glutathione metabolism SBML MML
tbr00500 Starch and sucrose metabolism SBML MML
tbr00510 (Undocumented) SBML MML
tbr00520 Amino sugar and nucleotide sugar metabolism SBML MML
tbr00521 Streptomycin biosynthesis SBML MML
tbr00530 (Undocumented) SBML MML
tbr00550 Peptidoglycan biosynthesis SBML MML
tbr00561 Glycerolipid metabolism SBML MML
tbr00562 Inositol phosphate metabolism SBML MML
tbr00564 Glycerophospholipid metabolism SBML MML
tbr00565 Ether lipid metabolism SBML MML
tbr00590 Arachidonic acid metabolism SBML MML
tbr00592 alpha-Linolenic acid metabolism SBML MML
tbr00600 Sphingolipid metabolism SBML MML
tbr00620 Pyruvate metabolism SBML MML
tbr00624 1- and 2-Methylnaphthalene degradation SBML MML
tbr00626 Naphthalene and anthracene degradation SBML MML
tbr00630 Glyoxylate and dicarboxylate metabolism SBML MML
tbr00632 (Undocumented) SBML MML
tbr00640 Propanoate metabolism SBML MML
tbr00641 3-Chloroacrylic acid degradation SBML MML
tbr00642 Ethylbenzene degradation SBML MML
tbr00650 Butanoate metabolism SBML MML
tbr00670 One carbon pool by folate SBML MML
tbr00710 (Undocumented) SBML MML
tbr00720 (Undocumented) SBML MML
tbr00750 Vitamin B6 metabolism SBML MML
tbr00760 Nicotinate and nicotinamide metabolism SBML MML
tbr00770 Pantothenate and CoA biosynthesis SBML MML
tbr00780 Biotin metabolism SBML MML
tbr00785 Lipoic acid metabolism SBML MML
tbr00790 Folate biosynthesis SBML MML
tbr00791 Atrazine degradation SBML MML
tbr00860 Porphyrin and chlorophyll metabolism SBML MML
tbr00900 Terpenoid backbone biosynthesis SBML MML
tbr00903 (Undocumented) SBML MML
tbr00910 Nitrogen metabolism SBML MML
tbr00930 Caprolactam degradation SBML MML
tbr00960 (Undocumented) SBML MML
tbr00970 Aminoacyl-tRNA biosynthesis SBML MML
tbr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.