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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tca: Tribolium castaneum (red flour beetle)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tca00010 Glycolysis / Gluconeogenesis SBML MML
tca00020 Citrate cycle (TCA cycle) SBML MML
tca00030 Pentose phosphate pathway SBML MML
tca00031 (Undocumented) SBML MML
tca00040 Pentose and glucuronate interconversions SBML MML
tca00051 Fructose and mannose metabolism SBML MML
tca00052 Galactose metabolism SBML MML
tca00053 Ascorbate and aldarate metabolism SBML MML
tca00061 Fatty acid biosynthesis SBML MML
tca00062 Fatty acid elongation in mitochondria SBML MML
tca00071 Fatty acid metabolism SBML MML
tca00072 Synthesis and degradation of ketone bodies SBML MML
tca00100 (Undocumented) SBML MML
tca00120 (Undocumented) SBML MML
tca00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tca00150 Androgen and estrogen metabolism SBML MML
tca00220 (Undocumented) SBML MML
tca00230 Purine metabolism SBML MML
tca00240 Pyrimidine metabolism SBML MML
tca00251 (Undocumented) SBML MML
tca00252 (Undocumented) SBML MML
tca00260 Glycine, serine and threonine metabolism SBML MML
tca00271 (Undocumented) SBML MML
tca00272 (Undocumented) SBML MML
tca00280 Valine, leucine and isoleucine degradation SBML MML
tca00281 Geraniol degradation SBML MML
tca00290 Valine, leucine and isoleucine biosynthesis SBML MML
tca00300 Lysine biosynthesis SBML MML
tca00310 Lysine degradation SBML MML
tca00330 Arginine and proline metabolism SBML MML
tca00340 Histidine metabolism SBML MML
tca00350 Tyrosine metabolism SBML MML
tca00360 Phenylalanine metabolism SBML MML
tca00361 gamma-Hexachlorocyclohexane degradation SBML MML
tca00363 Bisphenol A degradation SBML MML
tca00380 Tryptophan metabolism SBML MML
tca00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tca00401 Novobiocin biosynthesis SBML MML
tca00410 beta-Alanine metabolism SBML MML
tca00430 Taurine and hypotaurine metabolism SBML MML
tca00440 Phosphonate and phosphinate metabolism SBML MML
tca00450 Selenoamino acid metabolism SBML MML
tca00460 (Undocumented) SBML MML
tca00471 D-Glutamine and D-glutamate metabolism SBML MML
tca00472 D-Arginine and D-ornithine metabolism SBML MML
tca00480 Glutathione metabolism SBML MML
tca00500 Starch and sucrose metabolism SBML MML
tca00510 (Undocumented) SBML MML
tca00520 Amino sugar and nucleotide sugar metabolism SBML MML
tca00521 Streptomycin biosynthesis SBML MML
tca00530 (Undocumented) SBML MML
tca00550 Peptidoglycan biosynthesis SBML MML
tca00561 Glycerolipid metabolism SBML MML
tca00562 Inositol phosphate metabolism SBML MML
tca00564 Glycerophospholipid metabolism SBML MML
tca00565 Ether lipid metabolism SBML MML
tca00590 Arachidonic acid metabolism SBML MML
tca00591 Linoleic acid metabolism SBML MML
tca00592 alpha-Linolenic acid metabolism SBML MML
tca00600 Sphingolipid metabolism SBML MML
tca00620 Pyruvate metabolism SBML MML
tca00624 1- and 2-Methylnaphthalene degradation SBML MML
tca00626 Naphthalene and anthracene degradation SBML MML
tca00630 Glyoxylate and dicarboxylate metabolism SBML MML
tca00632 (Undocumented) SBML MML
tca00640 Propanoate metabolism SBML MML
tca00641 3-Chloroacrylic acid degradation SBML MML
tca00643 Styrene degradation SBML MML
tca00650 Butanoate metabolism SBML MML
tca00670 One carbon pool by folate SBML MML
tca00680 Methane metabolism SBML MML
tca00710 (Undocumented) SBML MML
tca00720 (Undocumented) SBML MML
tca00730 Thiamine metabolism SBML MML
tca00740 Riboflavin metabolism SBML MML
tca00750 Vitamin B6 metabolism SBML MML
tca00760 Nicotinate and nicotinamide metabolism SBML MML
tca00770 Pantothenate and CoA biosynthesis SBML MML
tca00780 Biotin metabolism SBML MML
tca00790 Folate biosynthesis SBML MML
tca00860 Porphyrin and chlorophyll metabolism SBML MML
tca00900 Terpenoid backbone biosynthesis SBML MML
tca00901 (Undocumented) SBML MML
tca00903 (Undocumented) SBML MML
tca00910 Nitrogen metabolism SBML MML
tca00920 Sulfur metabolism SBML MML
tca00930 Caprolactam degradation SBML MML
tca00940 (Undocumented) SBML MML
tca00950 (Undocumented) SBML MML
tca00960 (Undocumented) SBML MML
tca00970 Aminoacyl-tRNA biosynthesis SBML MML
tca00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
tca00981 (Undocumented) SBML MML
tca00982 (Undocumented) SBML MML
tca00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.