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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism vvy: Vibrio vulnificus YJ016

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
vvy00010 Glycolysis / Gluconeogenesis SBML MML
vvy00020 Citrate cycle (TCA cycle) SBML MML
vvy00030 Pentose phosphate pathway SBML MML
vvy00031 (Undocumented) SBML MML
vvy00040 Pentose and glucuronate interconversions SBML MML
vvy00051 Fructose and mannose metabolism SBML MML
vvy00052 Galactose metabolism SBML MML
vvy00053 Ascorbate and aldarate metabolism SBML MML
vvy00061 Fatty acid biosynthesis SBML MML
vvy00062 Fatty acid elongation in mitochondria SBML MML
vvy00071 Fatty acid metabolism SBML MML
vvy00072 Synthesis and degradation of ketone bodies SBML MML
vvy00100 (Undocumented) SBML MML
vvy00120 (Undocumented) SBML MML
vvy00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
vvy00150 Androgen and estrogen metabolism SBML MML
vvy00220 (Undocumented) SBML MML
vvy00230 Purine metabolism SBML MML
vvy00240 Pyrimidine metabolism SBML MML
vvy00251 (Undocumented) SBML MML
vvy00252 (Undocumented) SBML MML
vvy00260 Glycine, serine and threonine metabolism SBML MML
vvy00271 (Undocumented) SBML MML
vvy00272 (Undocumented) SBML MML
vvy00280 Valine, leucine and isoleucine degradation SBML MML
vvy00281 Geraniol degradation SBML MML
vvy00290 Valine, leucine and isoleucine biosynthesis SBML MML
vvy00300 Lysine biosynthesis SBML MML
vvy00310 Lysine degradation SBML MML
vvy00330 Arginine and proline metabolism SBML MML
vvy00340 Histidine metabolism SBML MML
vvy00350 Tyrosine metabolism SBML MML
vvy00360 Phenylalanine metabolism SBML MML
vvy00361 gamma-Hexachlorocyclohexane degradation SBML MML
vvy00362 (Undocumented) SBML MML
vvy00363 Bisphenol A degradation SBML MML
vvy00364 Fluorobenzoate degradation SBML MML
vvy00380 Tryptophan metabolism SBML MML
vvy00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
vvy00401 Novobiocin biosynthesis SBML MML
vvy00410 beta-Alanine metabolism SBML MML
vvy00430 Taurine and hypotaurine metabolism SBML MML
vvy00440 Phosphonate and phosphinate metabolism SBML MML
vvy00450 Selenoamino acid metabolism SBML MML
vvy00460 (Undocumented) SBML MML
vvy00471 D-Glutamine and D-glutamate metabolism SBML MML
vvy00473 D-Alanine metabolism SBML MML
vvy00480 Glutathione metabolism SBML MML
vvy00500 Starch and sucrose metabolism SBML MML
vvy00520 Amino sugar and nucleotide sugar metabolism SBML MML
vvy00521 Streptomycin biosynthesis SBML MML
vvy00523 Polyketide sugar unit biosynthesis SBML MML
vvy00530 (Undocumented) SBML MML
vvy00540 Lipopolysaccharide biosynthesis SBML MML
vvy00550 Peptidoglycan biosynthesis SBML MML
vvy00561 Glycerolipid metabolism SBML MML
vvy00562 Inositol phosphate metabolism SBML MML
vvy00564 Glycerophospholipid metabolism SBML MML
vvy00592 alpha-Linolenic acid metabolism SBML MML
vvy00600 Sphingolipid metabolism SBML MML
vvy00620 Pyruvate metabolism SBML MML
vvy00624 1- and 2-Methylnaphthalene degradation SBML MML
vvy00626 Naphthalene and anthracene degradation SBML MML
vvy00627 1,4-Dichlorobenzene degradation SBML MML
vvy00630 Glyoxylate and dicarboxylate metabolism SBML MML
vvy00632 (Undocumented) SBML MML
vvy00633 Trinitrotoluene degradation SBML MML
vvy00640 Propanoate metabolism SBML MML
vvy00641 3-Chloroacrylic acid degradation SBML MML
vvy00642 Ethylbenzene degradation SBML MML
vvy00650 Butanoate metabolism SBML MML
vvy00660 C5-Branched dibasic acid metabolism SBML MML
vvy00670 One carbon pool by folate SBML MML
vvy00680 Methane metabolism SBML MML
vvy00710 (Undocumented) SBML MML
vvy00720 (Undocumented) SBML MML
vvy00730 Thiamine metabolism SBML MML
vvy00740 Riboflavin metabolism SBML MML
vvy00750 Vitamin B6 metabolism SBML MML
vvy00760 Nicotinate and nicotinamide metabolism SBML MML
vvy00770 Pantothenate and CoA biosynthesis SBML MML
vvy00780 Biotin metabolism SBML MML
vvy00785 Lipoic acid metabolism SBML MML
vvy00790 Folate biosynthesis SBML MML
vvy00860 Porphyrin and chlorophyll metabolism SBML MML
vvy00900 Terpenoid backbone biosynthesis SBML MML
vvy00903 (Undocumented) SBML MML
vvy00910 Nitrogen metabolism SBML MML
vvy00920 Sulfur metabolism SBML MML
vvy00930 Caprolactam degradation SBML MML
vvy00940 (Undocumented) SBML MML
vvy00950 (Undocumented) SBML MML
vvy00960 (Undocumented) SBML MML
vvy00970 Aminoacyl-tRNA biosynthesis SBML MML
vvy00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
vvy00982 (Undocumented) SBML MML
vvy00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.