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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xac: Xanthomonas axonopodis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xac00010 Glycolysis / Gluconeogenesis SBML MML
xac00020 Citrate cycle (TCA cycle) SBML MML
xac00030 Pentose phosphate pathway SBML MML
xac00031 (Undocumented) SBML MML
xac00040 Pentose and glucuronate interconversions SBML MML
xac00051 Fructose and mannose metabolism SBML MML
xac00052 Galactose metabolism SBML MML
xac00053 Ascorbate and aldarate metabolism SBML MML
xac00061 Fatty acid biosynthesis SBML MML
xac00062 Fatty acid elongation in mitochondria SBML MML
xac00071 Fatty acid metabolism SBML MML
xac00072 Synthesis and degradation of ketone bodies SBML MML
xac00100 (Undocumented) SBML MML
xac00120 (Undocumented) SBML MML
xac00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xac00140 (Undocumented) SBML MML
xac00150 Androgen and estrogen metabolism SBML MML
xac00220 (Undocumented) SBML MML
xac00230 Purine metabolism SBML MML
xac00240 Pyrimidine metabolism SBML MML
xac00251 (Undocumented) SBML MML
xac00252 (Undocumented) SBML MML
xac00260 Glycine, serine and threonine metabolism SBML MML
xac00271 (Undocumented) SBML MML
xac00272 (Undocumented) SBML MML
xac00280 Valine, leucine and isoleucine degradation SBML MML
xac00281 Geraniol degradation SBML MML
xac00290 Valine, leucine and isoleucine biosynthesis SBML MML
xac00300 Lysine biosynthesis SBML MML
xac00310 Lysine degradation SBML MML
xac00311 Penicillin and cephalosporin biosynthesis SBML MML
xac00330 Arginine and proline metabolism SBML MML
xac00340 Histidine metabolism SBML MML
xac00350 Tyrosine metabolism SBML MML
xac00360 Phenylalanine metabolism SBML MML
xac00361 gamma-Hexachlorocyclohexane degradation SBML MML
xac00362 (Undocumented) SBML MML
xac00364 Fluorobenzoate degradation SBML MML
xac00380 Tryptophan metabolism SBML MML
xac00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xac00401 Novobiocin biosynthesis SBML MML
xac00410 beta-Alanine metabolism SBML MML
xac00430 Taurine and hypotaurine metabolism SBML MML
xac00440 Phosphonate and phosphinate metabolism SBML MML
xac00450 Selenoamino acid metabolism SBML MML
xac00460 (Undocumented) SBML MML
xac00471 D-Glutamine and D-glutamate metabolism SBML MML
xac00473 D-Alanine metabolism SBML MML
xac00480 Glutathione metabolism SBML MML
xac00500 Starch and sucrose metabolism SBML MML
xac00520 Amino sugar and nucleotide sugar metabolism SBML MML
xac00521 Streptomycin biosynthesis SBML MML
xac00523 Polyketide sugar unit biosynthesis SBML MML
xac00530 (Undocumented) SBML MML
xac00540 Lipopolysaccharide biosynthesis SBML MML
xac00550 Peptidoglycan biosynthesis SBML MML
xac00561 Glycerolipid metabolism SBML MML
xac00562 Inositol phosphate metabolism SBML MML
xac00564 Glycerophospholipid metabolism SBML MML
xac00565 Ether lipid metabolism SBML MML
xac00590 Arachidonic acid metabolism SBML MML
xac00591 Linoleic acid metabolism SBML MML
xac00592 alpha-Linolenic acid metabolism SBML MML
xac00600 Sphingolipid metabolism SBML MML
xac00620 Pyruvate metabolism SBML MML
xac00622 Toluene and xylene degradation SBML MML
xac00623 2,4-Dichlorobenzoate degradation SBML MML
xac00624 1- and 2-Methylnaphthalene degradation SBML MML
xac00626 Naphthalene and anthracene degradation SBML MML
xac00627 1,4-Dichlorobenzene degradation SBML MML
xac00628 Fluorene degradation SBML MML
xac00630 Glyoxylate and dicarboxylate metabolism SBML MML
xac00631 1,2-Dichloroethane degradation SBML MML
xac00632 (Undocumented) SBML MML
xac00640 Propanoate metabolism SBML MML
xac00641 3-Chloroacrylic acid degradation SBML MML
xac00642 Ethylbenzene degradation SBML MML
xac00643 Styrene degradation SBML MML
xac00650 Butanoate metabolism SBML MML
xac00660 C5-Branched dibasic acid metabolism SBML MML
xac00670 One carbon pool by folate SBML MML
xac00680 Methane metabolism SBML MML
xac00710 (Undocumented) SBML MML
xac00720 (Undocumented) SBML MML
xac00730 Thiamine metabolism SBML MML
xac00740 Riboflavin metabolism SBML MML
xac00750 Vitamin B6 metabolism SBML MML
xac00760 Nicotinate and nicotinamide metabolism SBML MML
xac00770 Pantothenate and CoA biosynthesis SBML MML
xac00780 Biotin metabolism SBML MML
xac00785 Lipoic acid metabolism SBML MML
xac00790 Folate biosynthesis SBML MML
xac00860 Porphyrin and chlorophyll metabolism SBML MML
xac00900 Terpenoid backbone biosynthesis SBML MML
xac00903 (Undocumented) SBML MML
xac00910 Nitrogen metabolism SBML MML
xac00920 Sulfur metabolism SBML MML
xac00930 Caprolactam degradation SBML MML
xac00940 (Undocumented) SBML MML
xac00950 (Undocumented) SBML MML
xac00960 (Undocumented) SBML MML
xac00970 Aminoacyl-tRNA biosynthesis SBML MML
xac00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xac00982 (Undocumented) SBML MML
xac00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.