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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypi: Yersinia pseudotuberculosis IP31758

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypi00010 Glycolysis / Gluconeogenesis SBML MML
ypi00020 Citrate cycle (TCA cycle) SBML MML
ypi00030 Pentose phosphate pathway SBML MML
ypi00031 (Undocumented) SBML MML
ypi00040 Pentose and glucuronate interconversions SBML MML
ypi00051 Fructose and mannose metabolism SBML MML
ypi00052 Galactose metabolism SBML MML
ypi00053 Ascorbate and aldarate metabolism SBML MML
ypi00061 Fatty acid biosynthesis SBML MML
ypi00062 Fatty acid elongation in mitochondria SBML MML
ypi00071 Fatty acid metabolism SBML MML
ypi00072 Synthesis and degradation of ketone bodies SBML MML
ypi00100 (Undocumented) SBML MML
ypi00120 (Undocumented) SBML MML
ypi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypi00150 Androgen and estrogen metabolism SBML MML
ypi00220 (Undocumented) SBML MML
ypi00230 Purine metabolism SBML MML
ypi00240 Pyrimidine metabolism SBML MML
ypi00251 (Undocumented) SBML MML
ypi00252 (Undocumented) SBML MML
ypi00260 Glycine, serine and threonine metabolism SBML MML
ypi00271 (Undocumented) SBML MML
ypi00272 (Undocumented) SBML MML
ypi00280 Valine, leucine and isoleucine degradation SBML MML
ypi00281 Geraniol degradation SBML MML
ypi00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypi00300 Lysine biosynthesis SBML MML
ypi00310 Lysine degradation SBML MML
ypi00330 Arginine and proline metabolism SBML MML
ypi00340 Histidine metabolism SBML MML
ypi00350 Tyrosine metabolism SBML MML
ypi00360 Phenylalanine metabolism SBML MML
ypi00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypi00362 (Undocumented) SBML MML
ypi00363 Bisphenol A degradation SBML MML
ypi00364 Fluorobenzoate degradation SBML MML
ypi00380 Tryptophan metabolism SBML MML
ypi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypi00401 Novobiocin biosynthesis SBML MML
ypi00410 beta-Alanine metabolism SBML MML
ypi00430 Taurine and hypotaurine metabolism SBML MML
ypi00450 Selenoamino acid metabolism SBML MML
ypi00460 (Undocumented) SBML MML
ypi00471 D-Glutamine and D-glutamate metabolism SBML MML
ypi00473 D-Alanine metabolism SBML MML
ypi00480 Glutathione metabolism SBML MML
ypi00500 Starch and sucrose metabolism SBML MML
ypi00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypi00521 Streptomycin biosynthesis SBML MML
ypi00523 Polyketide sugar unit biosynthesis SBML MML
ypi00530 (Undocumented) SBML MML
ypi00540 Lipopolysaccharide biosynthesis SBML MML
ypi00550 Peptidoglycan biosynthesis SBML MML
ypi00561 Glycerolipid metabolism SBML MML
ypi00562 Inositol phosphate metabolism SBML MML
ypi00564 Glycerophospholipid metabolism SBML MML
ypi00590 Arachidonic acid metabolism SBML MML
ypi00592 alpha-Linolenic acid metabolism SBML MML
ypi00600 Sphingolipid metabolism SBML MML
ypi00620 Pyruvate metabolism SBML MML
ypi00624 1- and 2-Methylnaphthalene degradation SBML MML
ypi00626 Naphthalene and anthracene degradation SBML MML
ypi00627 1,4-Dichlorobenzene degradation SBML MML
ypi00628 Fluorene degradation SBML MML
ypi00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypi00632 (Undocumented) SBML MML
ypi00633 Trinitrotoluene degradation SBML MML
ypi00640 Propanoate metabolism SBML MML
ypi00641 3-Chloroacrylic acid degradation SBML MML
ypi00642 Ethylbenzene degradation SBML MML
ypi00650 Butanoate metabolism SBML MML
ypi00660 C5-Branched dibasic acid metabolism SBML MML
ypi00670 One carbon pool by folate SBML MML
ypi00680 Methane metabolism SBML MML
ypi00710 (Undocumented) SBML MML
ypi00720 (Undocumented) SBML MML
ypi00730 Thiamine metabolism SBML MML
ypi00740 Riboflavin metabolism SBML MML
ypi00750 Vitamin B6 metabolism SBML MML
ypi00760 Nicotinate and nicotinamide metabolism SBML MML
ypi00770 Pantothenate and CoA biosynthesis SBML MML
ypi00780 Biotin metabolism SBML MML
ypi00785 Lipoic acid metabolism SBML MML
ypi00790 Folate biosynthesis SBML MML
ypi00791 Atrazine degradation SBML MML
ypi00860 Porphyrin and chlorophyll metabolism SBML MML
ypi00900 Terpenoid backbone biosynthesis SBML MML
ypi00903 (Undocumented) SBML MML
ypi00910 Nitrogen metabolism SBML MML
ypi00920 Sulfur metabolism SBML MML
ypi00930 Caprolactam degradation SBML MML
ypi00940 (Undocumented) SBML MML
ypi00950 (Undocumented) SBML MML
ypi00960 (Undocumented) SBML MML
ypi00970 Aminoacyl-tRNA biosynthesis SBML MML
ypi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypi00982 (Undocumented) SBML MML
ypi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.