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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00440: Phosphonate and phosphinate metabolism

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aav00440 Acidovorax avenae SBML MML
abc00440 Acinetobacter baumannii ACICU SBML MML
abm00440 Acinetobacter baumannii SDF SBML MML
abo00440 Alcanivorax borkumensis SBML MML
aby00440 Acinetobacter baumannii AYE SBML MML
acb00440 Acinetobacter baumannii ATCC 17978 SBML MML
aci00440 Acinetobacter sp. ADP1 SBML MML
afm00440 Aspergillus fumigatus SBML MML
aga00440 Anopheles gambiae (mosquito) SBML MML
ago00440 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00440 Aeromonas hydrophila SBML MML
amr00440 Acaryochloris marina SBML MML
ang00440 Aspergillus niger SBML MML
ani00440 Aspergillus nidulans SBML MML
aor00440 Aspergillus oryzae SBML MML
apl00440 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
asa00440 Aeromonas salmonicida SBML MML
atc00440 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00440 Arabidopsis thaliana (thale cress) SBML MML
atu00440 Agrobacterium tumefaciens C58 SBML MML
azc00440 Azorhizobium caulinodans SBML MML
azo00440 Azoarcus sp. BH72 SBML MML
baa00440 Bacillus anthracis A2012 SBML MML
bac00440 Burkholderia ambifaria MC40-6 SBML MML
ban00440 Bacillus anthracis Ames SBML MML
bar00440 Bacillus anthracis Ames 0581 SBML MML
bat00440 Bacillus anthracis Sterne SBML MML
bay00440 Bacillus amyloliquefaciens SBML MML
bba00440 Bdellovibrio bacteriovorus SBML MML
bbr00440 Bordetella bronchiseptica SBML MML
bca00440 Bacillus cereus ATCC 10987 SBML MML
bce00440 Bacillus cereus ATCC 14579 SBML MML
bch00440 Burkholderia cenocepacia HI2424 SBML MML
bcl00440 Bacillus clausii SBML MML
bcm00440 Burkholderia cenocepacia MC0-3 SBML MML
bcn00440 Burkholderia cenocepacia AU1054 SBML MML
bcs00440 Brucella canis SBML MML
bcy00440 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00440 Bacillus cereus ZK SBML MML
bfr00440 Bacteroides fragilis YCH46 SBML MML
bfs00440 Bacteroides fragilis NCTC9343 SBML MML
bha00440 Bacillus halodurans SBML MML
bid00440 Beijerinckia indica SBML MML
bja00440 Bradyrhizobium japonicum SBML MML
bld00440 Bacillus licheniformis DSM13 SBML MML
bli00440 Bacillus licheniformis ATCC 14580 SBML MML
bma00440 Burkholderia mallei ATCC 23344 SBML MML
bmb00440 Brucella abortus 9-941 SBML MML
bmc00440 Brucella abortus S19 SBML MML
bme00440 Brucella melitensis 16M SBML MML
bmf00440 Brucella melitensis biovar Abortus SBML MML
bml00440 Burkholderia mallei NCTC 10229 SBML MML
bmn00440 Burkholderia mallei NCTC 10247 SBML MML
bms00440 Brucella suis 1330 SBML MML
bmt00440 Brucella suis ATCC 23445 SBML MML
bmu00440 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00440 Burkholderia mallei SAVP1 SBML MML
bmy00440 Brugia malayi (filaria) SBML MML
bov00440 Brucella ovis SBML MML
bpd00440 Burkholderia pseudomallei 668 SBML MML
bph00440 Burkholderia phymatum SBML MML
bpl00440 Burkholderia pseudomallei 1106a SBML MML
bpm00440 Burkholderia pseudomallei 1710b SBML MML
bps00440 Burkholderia pseudomallei K96243 SBML MML
bpu00440 Bacillus pumilus SBML MML
bsu00440 Bacillus subtilis SBML MML
bte00440 Burkholderia thailandensis SBML MML
bth00440 Bacteroides thetaiotaomicron SBML MML
btk00440 Bacillus thuringiensis 97-27 SBML MML
btl00440 Bacillus thuringiensis Al Hakam SBML MML
bvi00440 Burkholderia vietnamiensis SBML MML
bvu00440 Bacteroides vulgatus SBML MML
bwe00440 Bacillus weihenstephanensis SBML MML
bxe00440 Burkholderia xenovorans SBML MML
cak00440 Caulobacter sp. K31 SBML MML
cbe00440 Clostridium beijerinckii SBML MML
cbl00440 Clostridium botulinum A3 Loch Maree SBML MML
cbu00440 Coxiella burnetii RSA 493 SBML MML
cdf00440 Clostridium difficile SBML MML
cel00440 Caenorhabditis elegans (nematode) SBML MML
cfa00440 Canis familiaris (dog) SBML MML
cgr00440 Candida glabrata SBML MML
cho00440 Cryptosporidium hominis SBML MML
cja00440 Cellvibrio japonicus SBML MML
cju00440 Campylobacter jejuni 81116 SBML MML
ckl00440 Clostridium kluyveri DSM 555 SBML MML
cme00440 Cyanidioschyzon merolae SBML MML
cnb00440 Cryptococcus neoformans B-3501A SBML MML
cne00440 Cryptococcus neoformans JEC21 SBML MML
cpe00440 Clostridium perfringens 13 SBML MML
cps00440 Colwellia psychrerythraea SBML MML
cpv00440 Cryptosporidium parvum SBML MML
cre00440 Chlamydomonas reinhardtii SBML MML
ctc00440 Clostridium tetani E88 SBML MML
cti00440 Cupriavidus taiwanensis SBML MML
cvi00440 Chromobacterium violaceum SBML MML
daag00440 (Undocumented) SBML MML
dac00440 Delftia acidovorans SBML MML
dame00440 (Undocumented) SBML MML
dbmo00440 Bombyx mori (silkmoth) SBML MML
dcbr00440 (Undocumented) SBML MML
dcin00440 (Undocumented) SBML MML
ddi00440 Dictyostelium discoideum SBML MML
decb00440 (Undocumented) SBML MML
dfru00440 Fugu rubripes (Japanese puffer fish) SBML MML
dha00440 Debaryomyces hansenii SBML MML
dkwa00440 Kluyveromyces waltii SBML MML
dme00440 Drosophila melanogaster (fruit fly) SBML MML
dola00440 Oryzias latipes (Japanese medaka) SBML MML
dota00440 Ostreococcus tauri SBML MML
dpkn00440 (Undocumented) SBML MML
dpo00440 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00440 (Undocumented) SBML MML
dptm00440 (Undocumented) SBML MML
dre00440 Danio rerio (zebrafish) SBML MML
dsba00440 Saccharomyces bayanus SBML MML
dsmi00440 Saccharomyces mikatae SBML MML
dspd00440 (Undocumented) SBML MML
dtni00440 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00440 (Undocumented) SBML MML
dvvi00440 (Undocumented) SBML MML
eacp00440 (Undocumented) SBML MML
eath00440 Arabidopsis thaliana (thale cress) (EST) SBML MML
ebna00440 Brassica napus (rape) (EST) SBML MML
ebvl00440 Beta vulgaris (beet) (EST) SBML MML
eca00440 Erwinia carotovora SBML MML
ecan00440 Capsicum annuum (chile pepper) (EST) SBML MML
ecp00440 Escherichia coli 536 (UPEC) SBML MML
ecsi00440 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00440 Ciona savignyi (EST) SBML MML
eees00440 Euphorbia esula (leafy spurge) (EST) SBML MML
efar00440 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00440 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00440 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00440 Glycine max (soybean) (EST) SBML MML
egra00440 Gossypium raimondii (EST) SBML MML
ehan00440 Helianthus annuus (sunflower) (EST) SBML MML
ehi00440 Entamoeba histolytica SBML MML
ehvu00440 Hordeum vulgare (barley) (EST) SBML MML
eini00440 Ipomoea nil (Japanese morning glory) (EST) SBML MML
elja00440 Lotus japonicus (lotus) (EST) SBML MML
elpe00440 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00440 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00440 Lactuca sativa (lettuce) (EST) SBML MML
elvi00440 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00440 Manihot esculenta (cassava) (EST) SBML MML
emte00440 Molgula tectiformis (EST) SBML MML
emtr00440 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00440 Nicotiana benthamiana (EST) SBML MML
enta00440 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00440 Oryza sativa (rice) (EST) SBML MML
eosi00440 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00440 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00440 Picea glauca (white spruce) (EST) SBML MML
epop00440 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00440 (Undocumented) SBML MML
eppi00440 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00440 Physcomitrella patens subsp. patens (EST) SBML MML
epps00440 Prunus persica (peach) (EST) SBML MML
epsi00440 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00440 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00440 Populus tremula (European aspen) (EST) SBML MML
eru00440 Ehrlichia ruminantium Welgevonden (South Africa) SBML MML
esbi00440 Sorghum bicolor (sorghum) (EST) SBML MML
esja00440 Schistosoma japonicum (fluke) (EST) SBML MML
esly00440 Solanum lycopersicum (tomato) (EST) SBML MML
esof00440 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00440 (Undocumented) SBML MML
estu00440 Solanum tuberosum (potato) (EST) SBML MML
eta00440 Erwinia tasmaniensis SBML MML
etae00440 Triticum aestivum (wheat) (EST) SBML MML
evvi00440 Vitis vinifera (wine grape) (EST) SBML MML
ezel00440 (Undocumented) SBML MML
ezma00440 Zea mays (maize) (EST) SBML MML
fal00440 Frankia alni SBML MML
fgr00440 Fusarium graminearum SBML MML
fnu00440 Fusobacterium nucleatum SBML MML
fra00440 Frankia sp. CcI3 SBML MML
fth00440 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftw00440 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00440 Granulobacter bethesdensis SBML MML
gfo00440 Gramella forsetii SBML MML
gga00440 Gallus gallus (chicken) SBML MML
gka00440 Geobacillus kaustophilus SBML MML
gme00440 Geobacter metallireducens SBML MML
gur00440 Geobacter uraniumreducens SBML MML
hch00440 Hahella chejuensis SBML MML
hma00440 Haloarcula marismortui SBML MML
hpa00440 Helicobacter pylori HPAG1 SBML MML
hsa00440 Homo sapiens (human) SBML MML
kla00440 Kluyveromyces lactis SBML MML
kpn00440 Klebsiella pneumoniae SBML MML
krh00440 Kocuria rhizophila SBML MML
lbc00440 Laccaria bicolor SBML MML
lci00440 Leuconostoc citreum SBML MML
ldb00440 Lactobacillus delbrueckii ATCC 11842 SBML MML
lfe00440 Lactobacillus fermentum SBML MML
lin00440 Listeria innocua SBML MML
llm00440 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00440 Leishmania major SBML MML
lmf00440 Listeria monocytogenes F2365 SBML MML
lmo00440 Listeria monocytogenes EGD-e SBML MML
lpc00440 Legionella pneumophila Corby SBML MML
lpl00440 Lactobacillus plantarum WCFS1 SBML MML
lre00440 Lactobacillus reuteri DSM 20016 SBML MML
lsa00440 Lactobacillus sakei SBML MML
lsl00440 Lactobacillus salivarius SBML MML
lsp00440 Lysinibacillus sphaericus SBML MML
lwe00440 Listeria welshimeri SLCC5334 SBML MML
mab00440 Mycobacterium abscessus ATCC 19977T SBML MML
mbn00440 Candidatus Methanoregula boonei SBML MML
mbr00440 Monosiga brevicollis SBML MML
mcc00440 Macaca mulatta (rhesus monkey) SBML MML
mdo00440 Monodelphis domestica (opossum) SBML MML
met00440 Methylobacterium sp. 4-46 SBML MML
mex00440 Methylobacterium extorquens SBML MML
mgl00440 Malassezia globosa SBML MML
mgr00440 Magnaporthe grisea SBML MML
mlo00440 Mesorhizobium loti SBML MML
mma00440 Methanosarcina mazei SBML MML
mmc00440 Mycobacterium sp. MCS SBML MML
mmu00440 Mus musculus (mouse) SBML MML
mpt00440 Methylibium petroleiphilum SBML MML
mrd00440 Methylobacterium radiotolerans SBML MML
msm00440 Mycobacterium smegmatis SBML MML
ncr00440 Neurospora crassa SBML MML
noc00440 Nitrosococcus oceani SBML MML
nph00440 Natronomonas pharaonis SBML MML
nve00440 Nematostella vectensis (sea anemone) SBML MML
oaa00440 Ornithorhynchus anatinus (platypus) SBML MML
oan00440 Ochrobactrum anthropi SBML MML
olu00440 Ostreococcus lucimarinus SBML MML
osa00440 Oryza sativa japonica (Japanese rice) SBML MML
ote00440 Opitutus terrae SBML MML
pac00440 Propionibacterium acnes SBML MML
pae00440 Pseudomonas aeruginosa PAO1 SBML MML
pan00440 Podospora anserina SBML MML
pap00440 Pseudomonas aeruginosa PA7 SBML MML
pau00440 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00440 Pelobacter carbinolicus SBML MML
pdi00440 Parabacteroides distasonis SBML MML
pen00440 Pseudomonas entomophila SBML MML
pfa00440 Plasmodium falciparum 3D7 SBML MML
pfl00440 Pseudomonas fluorescens Pf-5 SBML MML
pfo00440 Pseudomonas fluorescens Pf0-1 SBML MML
pic00440 Pichia stipitis SBML MML
pin00440 Psychromonas ingrahamii SBML MML
ppd00440 Pelobacter propionicus SBML MML
ppf00440 Pseudomonas putida F1 SBML MML
ppg00440 Pseudomonas putida GB-1 SBML MML
ppp00440 Physcomitrella patens subsp. patens SBML MML
ppu00440 Pseudomonas putida KT2440 SBML MML
ppw00440 Pseudomonas putida W619 SBML MML
ptr00440 Pan troglodytes (chimpanzee) SBML MML
pub00440 Candidatus Pelagibacter ubique SBML MML
pyo00440 Plasmodium yoelii SBML MML
rba00440 Rhodopirellula baltica SBML MML
rca00440 Roseiflexus castenholzii DSM13941 SBML MML
rci00440 Uncultured methanogenic archaeon RC-I SBML MML
rde00440 Roseobacter denitrificans SBML MML
rec00440 Rhizobium etli CIAT 652 SBML MML
reh00440 Ralstonia eutropha H16 SBML MML
ret00440 Rhizobium etli CFN 42 SBML MML
reu00440 Ralstonia eutropha JMP134 SBML MML
rle00440 Rhizobium leguminosarum SBML MML
rme00440 Ralstonia metallidurans SBML MML
rno00440 Rattus norvegicus (rat) SBML MML
rpa00440 Rhodopseudomonas palustris CGA009 SBML MML
rpe00440 Rhodopseudomonas palustris BisA53 SBML MML
rpt00440 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00440 Roseiflexus sp. RS-1 SBML MML
rsp00440 Rhodobacter sphaeroides 2.4.1 SBML MML
saa00440 Staphylococcus aureus USA300 SBML MML
sac00440 Staphylococcus aureus COL SBML MML
sag00440 Streptococcus agalactiae 2603 (serotype V) SBML MML
sak00440 Streptococcus agalactiae A909 (serotype Ia) SBML MML
sam00440 Staphylococcus aureus MW2 SBML MML
san00440 Streptococcus agalactiae NEM316 (serotype III) SBML MML
sao00440 Staphylococcus aureus NCTC8325 SBML MML
saq00440 Salinispora arenicola SBML MML
sar00440 Staphylococcus aureus MRSA252 SBML MML
sas00440 Staphylococcus aureus MSSA476 SBML MML
sat00440 Syntrophus aciditrophicus SBML MML
sau00440 Staphylococcus aureus N315 SBML MML
sav00440 Staphylococcus aureus Mu50 SBML MML
sce00440 Saccharomyces cerevisiae SBML MML
scl00440 Sorangium cellulosum SBML MML
sdn00440 Shewanella denitrificans SBML MML
sen00440 Saccharopolyspora erythraea SBML MML
sep00440 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00440 Staphylococcus epidermidis RP62A SBML MML
sfu00440 Syntrophobacter fumaroxidans SBML MML
smd00440 Sinorhizobium medicae SBML MML
sme00440 Sinorhizobium meliloti SBML MML
spd00440 Streptococcus pneumoniae D39 SBML MML
spo00440 Schizosaccharomyces pombe SBML MML
spq00440 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spt00440 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00440 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spv00440 Streptococcus pneumoniae Hungary19A 6 SBML MML
ssa00440 Streptococcus sanguinis SBML MML
ssp00440 Staphylococcus saprophyticus SBML MML
ste00440 Streptococcus thermophilus LMD-9 SBML MML
stl00440 Streptococcus thermophilus LMG18311 SBML MML
stm00440 Salmonella typhimurium LT2 SBML MML
stt00440 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00440 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
syg00440 Synechococcus sp. CC9311 SBML MML
syn00440 Synechocystis sp. PCC6803 SBML MML
tan00440 Theileria annulata SBML MML
tbr00440 Trypanosoma brucei SBML MML
tca00440 Tribolium castaneum (red flour beetle) SBML MML
tcr00440 Trypanosoma cruzi SBML MML
tet00440 Tetrahymena thermophila SBML MML
tme00440 Thermosipho melanesiensis SBML MML
tpv00440 Theileria parva SBML MML
tva00440 Trichomonas vaginalis SBML MML
vch00440 Vibrio cholerae O1 SBML MML
vco00440 Vibrio cholerae O395 SBML MML
vfi00440 Vibrio fischeri SBML MML
vha00440 Vibrio harveyi SBML MML
vpa00440 Vibrio parahaemolyticus SBML MML
vpo00440 Vanderwaltozyma polyspora SBML MML
vvu00440 Vibrio vulnificus CMCP6 SBML MML
vvy00440 Vibrio vulnificus YJ016 SBML MML
xac00440 Xanthomonas axonopodis SBML MML
xau00440 Xanthobacter autotrophicus SBML MML
xcb00440 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00440 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xla00440 Xenopus laevis (African clawed frog) SBML MML
xom00440 Xanthomonas oryzae MAFF311018 SBML MML
xoo00440 Xanthomonas oryzae KACC10331 SBML MML
xtr00440 Xenopus tropicalis (western clawed frog) SBML MML
yli00440 Yarrowia lipolytica SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.