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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00600: Sphingolipid metabolism

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aau00600 Arthrobacter aurescens SBML MML
aba00600 Acidobacteria bacterium SBML MML
afm00600 Aspergillus fumigatus SBML MML
aga00600 Anopheles gambiae (mosquito) SBML MML
ago00600 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00600 Aeromonas hydrophila SBML MML
ang00600 Aspergillus niger SBML MML
ani00600 Aspergillus nidulans SBML MML
aor00600 Aspergillus oryzae SBML MML
art00600 Arthrobacter sp. FB24 SBML MML
atc00600 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00600 Arabidopsis thaliana (thale cress) SBML MML
atu00600 Agrobacterium tumefaciens C58 SBML MML
bac00600 Burkholderia ambifaria MC40-6 SBML MML
bad00600 Bifidobacterium adolescentis SBML MML
bam00600 Burkholderia cepacia SBML MML
bch00600 Burkholderia cenocepacia HI2424 SBML MML
bcl00600 Bacillus clausii SBML MML
bcm00600 Burkholderia cenocepacia MC0-3 SBML MML
bcz00600 Bacillus cereus ZK SBML MML
bfr00600 Bacteroides fragilis YCH46 SBML MML
bfs00600 Bacteroides fragilis NCTC9343 SBML MML
bha00600 Bacillus halodurans SBML MML
bid00600 Beijerinckia indica SBML MML
bld00600 Bacillus licheniformis DSM13 SBML MML
bli00600 Bacillus licheniformis ATCC 14580 SBML MML
blj00600 Bifidobacterium longum DJO10A SBML MML
blo00600 Bifidobacterium longum NCC2705 SBML MML
bmu00600 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmy00600 Brugia malayi (filaria) SBML MML
bpd00600 Burkholderia pseudomallei 668 SBML MML
bph00600 Burkholderia phymatum SBML MML
bpl00600 Burkholderia pseudomallei 1106a SBML MML
bpm00600 Burkholderia pseudomallei 1710b SBML MML
bps00600 Burkholderia pseudomallei K96243 SBML MML
bpu00600 Bacillus pumilus SBML MML
bsu00600 Bacillus subtilis SBML MML
bta00600 Bos taurus (cow) SBML MML
bte00600 Burkholderia thailandensis SBML MML
bth00600 Bacteroides thetaiotaomicron SBML MML
bur00600 Burkholderia sp. 383 SBML MML
bvi00600 Burkholderia vietnamiensis SBML MML
bvu00600 Bacteroides vulgatus SBML MML
bxe00600 Burkholderia xenovorans SBML MML
cak00600 Caulobacter sp. K31 SBML MML
cal00600 Candida albicans SBML MML
cau00600 Chloroflexus aurantiacus SBML MML
cba00600 Clostridium botulinum A ATCC 19397 SBML MML
cbb00600 Clostridium botulinum B1 Okra SBML MML
cbe00600 Clostridium beijerinckii SBML MML
cbf00600 Clostridium botulinum F Langeland SBML MML
cbh00600 Clostridium botulinum A Hall SBML MML
cbl00600 Clostridium botulinum A3 Loch Maree SBML MML
cbo00600 Clostridium botulinum A ATCC 3502 SBML MML
cel00600 Caenorhabditis elegans (nematode) SBML MML
cfa00600 Canis familiaris (dog) SBML MML
cgl00600 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00600 Candida glabrata SBML MML
cja00600 Cellvibrio japonicus SBML MML
cko00600 Citrobacter koseri ATCC BAA-895 SBML MML
cma00600 Caldivirga maquilingensis SBML MML
cme00600 Cyanidioschyzon merolae SBML MML
cmi00600 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00600 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00600 Cryptococcus neoformans B-3501A SBML MML
cne00600 Cryptococcus neoformans JEC21 SBML MML
cpe00600 Clostridium perfringens 13 SBML MML
cpf00600 Clostridium perfringens ATCC 13124 SBML MML
cpr00600 Clostridium perfringens SM101 SBML MML
cps00600 Colwellia psychrerythraea SBML MML
cpy00600 Clostridium phytofermentans SBML MML
cre00600 Chlamydomonas reinhardtii SBML MML
csc00600 Caldicellulosiruptor saccharolyticus SBML MML
cyt00600 Cyanothece sp. ATCC 51142 SBML MML
daag00600 (Undocumented) SBML MML
dame00600 (Undocumented) SBML MML
dbmo00600 Bombyx mori (silkmoth) SBML MML
dcbr00600 (Undocumented) SBML MML
dcin00600 (Undocumented) SBML MML
ddi00600 Dictyostelium discoideum SBML MML
decb00600 (Undocumented) SBML MML
dfru00600 Fugu rubripes (Japanese puffer fish) SBML MML
dge00600 Deinococcus geothermalis SBML MML
dha00600 Debaryomyces hansenii SBML MML
dkwa00600 Kluyveromyces waltii SBML MML
dme00600 Drosophila melanogaster (fruit fly) SBML MML
dola00600 Oryzias latipes (Japanese medaka) SBML MML
dota00600 Ostreococcus tauri SBML MML
dpo00600 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00600 (Undocumented) SBML MML
dptm00600 (Undocumented) SBML MML
dre00600 Danio rerio (zebrafish) SBML MML
dsba00600 Saccharomyces bayanus SBML MML
dsh00600 Dinoroseobacter shibae SBML MML
dsmi00600 Saccharomyces mikatae SBML MML
dspd00600 (Undocumented) SBML MML
dtni00600 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00600 (Undocumented) SBML MML
dvvi00600 (Undocumented) SBML MML
eacp00600 (Undocumented) SBML MML
eath00600 Arabidopsis thaliana (thale cress) (EST) SBML MML
ebna00600 Brassica napus (rape) (EST) SBML MML
ebvl00600 Beta vulgaris (beet) (EST) SBML MML
eca00600 Erwinia carotovora SBML MML
ecan00600 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00600 Escherichia coli CFT073 (UPEC) SBML MML
ecd00600 Escherichia coli K-12 DH10B SBML MML
ece00600 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00600 Escherichia coli UTI89 (UPEC) SBML MML
ecj00600 Escherichia coli K-12 W3110 SBML MML
ecl00600 Escherichia coli ATCC 8739 SBML MML
ecm00600 Escherichia coli SECEC SBML MML
eco00600 Escherichia coli K-12 MG1655 SBML MML
ecp00600 Escherichia coli 536 (UPEC) SBML MML
ecs00600 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00600 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00600 Ciona savignyi (EST) SBML MML
ecv00600 Escherichia coli APEC O1 SBML MML
ecw00600 Escherichia coli E24377A SBML MML
ecx00600 Escherichia coli HS SBML MML
eees00600 Euphorbia esula (leafy spurge) (EST) SBML MML
efar00600 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00600 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00600 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00600 Glycine max (soybean) (EST) SBML MML
egra00600 Gossypium raimondii (EST) SBML MML
ehan00600 Helianthus annuus (sunflower) (EST) SBML MML
ehi00600 Entamoeba histolytica SBML MML
ehvu00600 Hordeum vulgare (barley) (EST) SBML MML
eini00600 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00600 Erythrobacter litoralis SBML MML
elja00600 Lotus japonicus (lotus) (EST) SBML MML
elpe00600 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00600 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00600 Lactuca sativa (lettuce) (EST) SBML MML
elvi00600 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00600 Manihot esculenta (cassava) (EST) SBML MML
emte00600 Molgula tectiformis (EST) SBML MML
emtr00600 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00600 Nicotiana benthamiana (EST) SBML MML
ent00600 Enterobacter sp. 638 SBML MML
enta00600 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00600 Oryza sativa (rice) (EST) SBML MML
eosi00600 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00600 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00600 Picea glauca (white spruce) (EST) SBML MML
epop00600 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00600 (Undocumented) SBML MML
eppi00600 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00600 Physcomitrella patens subsp. patens (EST) SBML MML
epps00600 Prunus persica (peach) (EST) SBML MML
epsi00600 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00600 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00600 Populus tremula (European aspen) (EST) SBML MML
esa00600 Enterobacter sakazakii SBML MML
esbi00600 Sorghum bicolor (sorghum) (EST) SBML MML
esi00600 Exiguobacterium sibiricum SBML MML
esja00600 Schistosoma japonicum (fluke) (EST) SBML MML
esly00600 Solanum lycopersicum (tomato) (EST) SBML MML
esof00600 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00600 (Undocumented) SBML MML
espu00600 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00600 Solanum tuberosum (potato) (EST) SBML MML
etae00600 Triticum aestivum (wheat) (EST) SBML MML
evvi00600 Vitis vinifera (wine grape) (EST) SBML MML
ezel00600 (Undocumented) SBML MML
ezma00600 Zea mays (maize) (EST) SBML MML
fgr00600 Fusarium graminearum SBML MML
fjo00600 Flavobacterium johnsoniae SBML MML
fno00600 Fervidobacterium nodosum SBML MML
fre00600 Frankia sp. EAN1pec SBML MML
fth00600 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00600 Francisella tularensis subsp. holarctica LVS SBML MML
ftw00600 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00600 Granulobacter bethesdensis SBML MML
gga00600 Gallus gallus (chicken) SBML MML
gla00600 Giardia lamblia SBML MML
gox00600 Gluconobacter oxydans SBML MML
hau00600 Herpetosiphon aurantiacus SBML MML
hma00600 Haloarcula marismortui SBML MML
hsa00600 Homo sapiens (human) SBML MML
kla00600 Kluyveromyces lactis SBML MML
kpn00600 Klebsiella pneumoniae SBML MML
kra00600 Kineococcus radiotolerans SBML MML
lac00600 Lactobacillus acidophilus SBML MML
lbc00600 Laccaria bicolor SBML MML
lbf00600 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00600 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbj00600 Leptospira borgpetersenii JB197 SBML MML
lbl00600 Leptospira borgpetersenii L550 SBML MML
lbr00600 Lactobacillus brevis SBML MML
lca00600 Lactobacillus casei ATCC 334 SBML MML
lch00600 Leptothrix cholodnii SBML MML
lfe00600 Lactobacillus fermentum SBML MML
lic00600 Leptospira interrogans serovar Copenhageni SBML MML
lil00600 Leptospira interrogans serovar lai SBML MML
ljo00600 Lactobacillus johnsonii SBML MML
lma00600 Leishmania major SBML MML
lme00600 Leuconostoc mesenteroides SBML MML
lpc00600 Legionella pneumophila Corby SBML MML
lpf00600 Legionella pneumophila Lens SBML MML
lpl00600 Lactobacillus plantarum WCFS1 SBML MML
lpn00600 Legionella pneumophila Philadelphia 1 SBML MML
lpp00600 Legionella pneumophila Paris SBML MML
lre00600 Lactobacillus reuteri DSM 20016 SBML MML
lsa00600 Lactobacillus sakei SBML MML
lsl00600 Lactobacillus salivarius SBML MML
mab00600 Mycobacterium abscessus ATCC 19977T SBML MML
mag00600 Magnetospirillum magneticum SBML MML
mbr00600 Monosiga brevicollis SBML MML
mcc00600 Macaca mulatta (rhesus monkey) SBML MML
mdo00600 Monodelphis domestica (opossum) SBML MML
met00600 Methylobacterium sp. 4-46 SBML MML
mex00600 Methylobacterium extorquens SBML MML
mgl00600 Malassezia globosa SBML MML
mgr00600 Magnaporthe grisea SBML MML
mlo00600 Mesorhizobium loti SBML MML
mmu00600 Mus musculus (mouse) SBML MML
mmw00600 Marinomonas sp. MWYL1 SBML MML
msm00600 Mycobacterium smegmatis SBML MML
msu00600 Mannheimia succiniciproducens SBML MML
mxa00600 Myxococcus xanthus SBML MML
ncr00600 Neurospora crassa SBML MML
nve00600 Nematostella vectensis (sea anemone) SBML MML
oaa00600 Ornithorhynchus anatinus (platypus) SBML MML
olu00600 Ostreococcus lucimarinus SBML MML
ooe00600 Oenococcus oeni SBML MML
osa00600 Oryza sativa japonica (Japanese rice) SBML MML
ote00600 Opitutus terrae SBML MML
pac00600 Propionibacterium acnes SBML MML
pan00600 Podospora anserina SBML MML
pat00600 Pseudoalteromonas atlantica SBML MML
pdi00600 Parabacteroides distasonis SBML MML
pgn00600 Porphyromonas gingivalis ATCC 33277 SBML MML
pic00600 Pichia stipitis SBML MML
pin00600 Psychromonas ingrahamii SBML MML
pla00600 Parvibaculum lavamentivorans SBML MML
pmo00600 Petrotoga mobilis SBML MML
ppe00600 Pediococcus pentosaceus SBML MML
ppp00600 Physcomitrella patens subsp. patens SBML MML
ppr00600 Photobacterium profundum SBML MML
ptr00600 Pan troglodytes (chimpanzee) SBML MML
rba00600 Rhodopirellula baltica SBML MML
rca00600 Roseiflexus castenholzii DSM13941 SBML MML
rde00600 Roseobacter denitrificans SBML MML
rec00600 Rhizobium etli CIAT 652 SBML MML
reh00600 Ralstonia eutropha H16 SBML MML
ret00600 Rhizobium etli CFN 42 SBML MML
reu00600 Ralstonia eutropha JMP134 SBML MML
rle00600 Rhizobium leguminosarum SBML MML
rme00600 Ralstonia metallidurans SBML MML
rno00600 Rattus norvegicus (rat) SBML MML
rrs00600 Roseiflexus sp. RS-1 SBML MML
rsa00600 Renibacterium salmoninarum SBML MML
sbo00600 Shigella boydii Sb227 SBML MML
sce00600 Saccharomyces cerevisiae SBML MML
scl00600 Sorangium cellulosum SBML MML
sco00600 Streptomyces coelicolor SBML MML
sde00600 Saccharophagus degradans SBML MML
sdy00600 Shigella dysenteriae SBML MML
sec00600 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00600 Saccharopolyspora erythraea SBML MML
ses00600 Salmonella enterica subsp. arizonae SBML MML
sfl00600 Shigella flexneri 301 (serotype 2a) SBML MML
sfv00600 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00600 Shigella flexneri 2457T (serotype 2a) SBML MML
sgr00600 Streptomyces griseus SBML MML
shl00600 Shewanella halifaxensis SBML MML
sit00600 Silicibacter sp. TM1040 SBML MML
sma00600 Streptomyces avermitilis SBML MML
smd00600 Sinorhizobium medicae SBML MML
sme00600 Sinorhizobium meliloti SBML MML
spd00600 Streptococcus pneumoniae D39 SBML MML
spe00600 Serratia proteamaculans SBML MML
spl00600 Shewanella pealeana SBML MML
spn00600 Streptococcus pneumoniae TIGR4 SBML MML
spo00600 Schizosaccharomyces pombe SBML MML
spq00600 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00600 Streptococcus pneumoniae R6 SBML MML
spu00600 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spv00600 Streptococcus pneumoniae Hungary19A 6 SBML MML
spw00600 Streptococcus pneumoniae CGSP14 (serotype 14) SBML MML
ssa00600 Streptococcus sanguinis SBML MML
ssc00600 Sus scrofa (pig) SBML MML
sse00600 Shewanella sediminis SBML MML
ssn00600 Shigella sonnei SBML MML
ssu00600 Streptococcus suis 05ZYH33 SBML MML
ssv00600 Streptococcus suis 98HAH33 SBML MML
sth00600 Symbiobacterium thermophilum SBML MML
stm00600 Salmonella typhimurium LT2 SBML MML
sus00600 Solibacter usitatus SBML MML
swd00600 Shewanella woodyi ATCC 51908 SBML MML
tac00600 Thermoplasma acidophilum SBML MML
tbr00600 Trypanosoma brucei SBML MML
tca00600 Tribolium castaneum (red flour beetle) SBML MML
tcr00600 Trypanosoma cruzi SBML MML
tet00600 Tetrahymena thermophila SBML MML
tex00600 Thermoanaerobacter sp. X514 SBML MML
tle00600 Thermotoga lettingae SBML MML
tma00600 Thermotoga maritima SBML MML
tpd00600 Thermoanaerobacter pseudethanolicus SBML MML
tpe00600 Thermofilum pendens SBML MML
tpt00600 Thermotoga petrophila SBML MML
trq00600 Thermotoga sp. RQ2 SBML MML
tte00600 Thermoanaerobacter tengcongensis SBML MML
tth00600 Thermus thermophilus HB27 SBML MML
ttj00600 Thermus thermophilus HB8 SBML MML
tva00600 Trichomonas vaginalis SBML MML
uma00600 Ustilago maydis SBML MML
vch00600 Vibrio cholerae O1 SBML MML
vco00600 Vibrio cholerae O395 SBML MML
vfi00600 Vibrio fischeri SBML MML
vha00600 Vibrio harveyi SBML MML
vpa00600 Vibrio parahaemolyticus SBML MML
vpo00600 Vanderwaltozyma polyspora SBML MML
vvu00600 Vibrio vulnificus CMCP6 SBML MML
vvy00600 Vibrio vulnificus YJ016 SBML MML
xac00600 Xanthomonas axonopodis SBML MML
xau00600 Xanthobacter autotrophicus SBML MML
xcb00600 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00600 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00600 Xanthomonas campestris pv. vesicatoria SBML MML
xla00600 Xenopus laevis (African clawed frog) SBML MML
xtr00600 Xenopus tropicalis (western clawed frog) SBML MML
yli00600 Yarrowia lipolytica SBML MML
ypa00600 Yersinia pestis Antiqua SBML MML
ype00600 Yersinia pestis CO92 SBML MML
ypg00600 Yersinia pestis Angola SBML MML
ypi00600 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00600 Yersinia pestis KIM SBML MML
ypm00600 Yersinia pestis Mediaevails SBML MML
ypn00600 Yersinia pestis Nepal516 SBML MML
ypp00600 Yersinia pestis Pestoides SBML MML
yps00600 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00600 Yersinia pseudotuberculosis YPIII SBML MML
zmo00600 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.