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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00624: 1- and 2-Methylnaphthalene degradation

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00624 Aquifex aeolicus SBML MML
aau00624 Arthrobacter aurescens SBML MML
aav00624 Acidovorax avenae SBML MML
aba00624 Acidobacteria bacterium SBML MML
abc00624 Acinetobacter baumannii ACICU SBML MML
abm00624 Acinetobacter baumannii SDF SBML MML
abo00624 Alcanivorax borkumensis SBML MML
abu00624 Arcobacter butzleri SBML MML
aby00624 Acinetobacter baumannii AYE SBML MML
acb00624 Acinetobacter baumannii ATCC 17978 SBML MML
ace00624 Acidothermus cellulolyticus SBML MML
aci00624 Acinetobacter sp. ADP1 SBML MML
acl00624 Acholeplasma laidlawii SBML MML
acr00624 Acidiphilium cryptum JF-5 SBML MML
aeh00624 Alkalilimnicola ehrlichei SBML MML
afm00624 Aspergillus fumigatus SBML MML
afu00624 Archaeoglobus fulgidus SBML MML
afw00624 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00624 Anopheles gambiae (mosquito) SBML MML
ago00624 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00624 Aeromonas hydrophila SBML MML
ajs00624 Acidovorax sp. JS42 SBML MML
amr00624 Acaryochloris marina SBML MML
amt00624 Alkaliphilus metalliredigens SBML MML
ana00624 Anabaena sp. PCC7120 SBML MML
ang00624 Aspergillus niger SBML MML
ani00624 Aspergillus nidulans SBML MML
aoe00624 Alkaliphilus oremlandii SBML MML
aor00624 Aspergillus oryzae SBML MML
apa00624 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00624 Aeropyrum pernix SBML MML
aph00624 Anaplasma phagocytophilum SBML MML
apj00624 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00624 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
asa00624 Aeromonas salmonicida SBML MML
asu00624 Actinobacillus succinogenes SBML MML
atc00624 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00624 Arabidopsis thaliana (thale cress) SBML MML
atu00624 Agrobacterium tumefaciens C58 SBML MML
ava00624 Anabaena variabilis SBML MML
azc00624 Azorhizobium caulinodans SBML MML
azo00624 Azoarcus sp. BH72 SBML MML
baa00624 Bacillus anthracis A2012 SBML MML
bac00624 Burkholderia ambifaria MC40-6 SBML MML
bad00624 Bifidobacterium adolescentis SBML MML
bam00624 Burkholderia cepacia SBML MML
ban00624 Bacillus anthracis Ames SBML MML
bar00624 Bacillus anthracis Ames 0581 SBML MML
bat00624 Bacillus anthracis Sterne SBML MML
bav00624 Bordetella avium SBML MML
bay00624 Bacillus amyloliquefaciens SBML MML
bba00624 Bdellovibrio bacteriovorus SBML MML
bbk00624 Bartonella bacilliformis SBML MML
bbr00624 Bordetella bronchiseptica SBML MML
bbt00624 Bradyrhizobium sp. BTAi1 SBML MML
bca00624 Bacillus cereus ATCC 10987 SBML MML
bce00624 Bacillus cereus ATCC 14579 SBML MML
bch00624 Burkholderia cenocepacia HI2424 SBML MML
bcl00624 Bacillus clausii SBML MML
bcm00624 Burkholderia cenocepacia MC0-3 SBML MML
bcn00624 Burkholderia cenocepacia AU1054 SBML MML
bcs00624 Brucella canis SBML MML
bcy00624 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00624 Bacillus cereus ZK SBML MML
bfr00624 Bacteroides fragilis YCH46 SBML MML
bfs00624 Bacteroides fragilis NCTC9343 SBML MML
bha00624 Bacillus halodurans SBML MML
bhe00624 Bartonella henselae SBML MML
bid00624 Beijerinckia indica SBML MML
bja00624 Bradyrhizobium japonicum SBML MML
bld00624 Bacillus licheniformis DSM13 SBML MML
bli00624 Bacillus licheniformis ATCC 14580 SBML MML
blj00624 Bifidobacterium longum DJO10A SBML MML
blo00624 Bifidobacterium longum NCC2705 SBML MML
bma00624 Burkholderia mallei ATCC 23344 SBML MML
bmb00624 Brucella abortus 9-941 SBML MML
bmc00624 Brucella abortus S19 SBML MML
bme00624 Brucella melitensis 16M SBML MML
bmf00624 Brucella melitensis biovar Abortus SBML MML
bml00624 Burkholderia mallei NCTC 10229 SBML MML
bmn00624 Burkholderia mallei NCTC 10247 SBML MML
bms00624 Brucella suis 1330 SBML MML
bmt00624 Brucella suis ATCC 23445 SBML MML
bmu00624 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00624 Burkholderia mallei SAVP1 SBML MML
bmy00624 Brugia malayi (filaria) SBML MML
bov00624 Brucella ovis SBML MML
bpa00624 Bordetella parapertussis SBML MML
bpd00624 Burkholderia pseudomallei 668 SBML MML
bpe00624 Bordetella pertussis SBML MML
bph00624 Burkholderia phymatum SBML MML
bpl00624 Burkholderia pseudomallei 1106a SBML MML
bpm00624 Burkholderia pseudomallei 1710b SBML MML
bps00624 Burkholderia pseudomallei K96243 SBML MML
bpt00624 Bordetella petrii SBML MML
bpu00624 Bacillus pumilus SBML MML
bqu00624 Bartonella quintana SBML MML
bra00624 Bradyrhizobium sp. ORS278 SBML MML
bsu00624 Bacillus subtilis SBML MML
bta00624 Bos taurus (cow) SBML MML
bte00624 Burkholderia thailandensis SBML MML
bth00624 Bacteroides thetaiotaomicron SBML MML
btk00624 Bacillus thuringiensis 97-27 SBML MML
btl00624 Bacillus thuringiensis Al Hakam SBML MML
btr00624 Bartonella tribocorum SBML MML
bur00624 Burkholderia sp. 383 SBML MML
bvi00624 Burkholderia vietnamiensis SBML MML
bvu00624 Bacteroides vulgatus SBML MML
bwe00624 Bacillus weihenstephanensis SBML MML
bxe00624 Burkholderia xenovorans SBML MML
cac00624 Clostridium acetobutylicum SBML MML
cak00624 Caulobacter sp. K31 SBML MML
cal00624 Candida albicans SBML MML
cau00624 Chloroflexus aurantiacus SBML MML
cba00624 Clostridium botulinum A ATCC 19397 SBML MML
cbb00624 Clostridium botulinum B1 Okra SBML MML
cbd00624 Coxiella burnetii Dugway 5J108-111 SBML MML
cbe00624 Clostridium beijerinckii SBML MML
cbf00624 Clostridium botulinum F Langeland SBML MML
cbh00624 Clostridium botulinum A Hall SBML MML
cbk00624 Clostridium botulinum B Eklund 17B SBML MML
cbl00624 Clostridium botulinum A3 Loch Maree SBML MML
cbo00624 Clostridium botulinum A ATCC 3502 SBML MML
cbs00624 Coxiella burnetii RSA 331 SBML MML
cch00624 Chlorobium chlorochromatii SBML MML
cco00624 Campylobacter concisus 13826 SBML MML
ccr00624 Caulobacter crescentus CB15 SBML MML
ccv00624 Campylobacter curvus SBML MML
cdf00624 Clostridium difficile SBML MML
cdi00624 Corynebacterium diphtheriae SBML MML
cef00624 Corynebacterium efficiens SBML MML
cel00624 Caenorhabditis elegans (nematode) SBML MML
cfa00624 Canis familiaris (dog) SBML MML
cff00624 Campylobacter fetus SBML MML
cgb00624 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00624 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00624 Candida glabrata SBML MML
cgt00624 Corynebacterium glutamicum R SBML MML
cha00624 Campylobacter hominis ATCC BAA-381 SBML MML
cho00624 Cryptosporidium hominis SBML MML
chu00624 Cytophaga hutchinsonii SBML MML
chy00624 Carboxydothermus hydrogenoformans SBML MML
cja00624 Cellvibrio japonicus SBML MML
cjk00624 Corynebacterium jeikeium SBML MML
cju00624 Campylobacter jejuni 81116 SBML MML
ckl00624 Clostridium kluyveri DSM 555 SBML MML
cko00624 Citrobacter koseri ATCC BAA-895 SBML MML
cma00624 Caldivirga maquilingensis SBML MML
cme00624 Cyanidioschyzon merolae SBML MML
cmi00624 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00624 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00624 Cryptococcus neoformans B-3501A SBML MML
cne00624 Cryptococcus neoformans JEC21 SBML MML
cno00624 Clostridium novyi SBML MML
cpb00624 Chlorobium phaeobacteroides BS1 SBML MML
cpe00624 Clostridium perfringens 13 SBML MML
cpf00624 Clostridium perfringens ATCC 13124 SBML MML
cpr00624 Clostridium perfringens SM101 SBML MML
cps00624 Colwellia psychrerythraea SBML MML
cpv00624 Cryptosporidium parvum SBML MML
cpy00624 Clostridium phytofermentans SBML MML
cre00624 Chlamydomonas reinhardtii SBML MML
csa00624 Chromohalobacter salexigens SBML MML
csc00624 Caldicellulosiruptor saccharolyticus SBML MML
ctc00624 Clostridium tetani E88 SBML MML
cte00624 Chlorobaculum tepidum SBML MML
cti00624 Cupriavidus taiwanensis SBML MML
cur00624 Corynebacterium urealyticum SBML MML
cvi00624 Chromobacterium violaceum SBML MML
cya00624 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00624 Cyanobacteria Yellowstone B-Prime SBML MML
cyt00624 Cyanothece sp. ATCC 51142 SBML MML
daag00624 (Undocumented) SBML MML
dac00624 Delftia acidovorans SBML MML
dame00624 (Undocumented) SBML MML
dar00624 Dechloromonas aromatica SBML MML
dau00624 Candidatus Desulforudis audaxviator SBML MML
dbmo00624 Bombyx mori (silkmoth) SBML MML
dcbr00624 (Undocumented) SBML MML
dcin00624 (Undocumented) SBML MML
dde00624 Desulfovibrio desulfuricans G20 SBML MML
ddi00624 Dictyostelium discoideum SBML MML
decb00624 (Undocumented) SBML MML
deh00624 Dehalococcoides sp. CBDB1 SBML MML
det00624 Dehalococcoides ethenogenes SBML MML
dfru00624 Fugu rubripes (Japanese puffer fish) SBML MML
dge00624 Deinococcus geothermalis SBML MML
dha00624 Debaryomyces hansenii SBML MML
dkwa00624 Kluyveromyces waltii SBML MML
dme00624 Drosophila melanogaster (fruit fly) SBML MML
dol00624 Candidatus Desulfococcus oleovorans SBML MML
dola00624 Oryzias latipes (Japanese medaka) SBML MML
dota00624 Ostreococcus tauri SBML MML
dpkn00624 (Undocumented) SBML MML
dpo00624 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00624 (Undocumented) SBML MML
dps00624 Desulfotalea psychrophila SBML MML
dptm00624 (Undocumented) SBML MML
dra00624 Deinococcus radiodurans SBML MML
dre00624 Danio rerio (zebrafish) SBML MML
drm00624 Desulfotomaculum reducens SBML MML
dsba00624 Saccharomyces bayanus SBML MML
dsh00624 Dinoroseobacter shibae SBML MML
dsmi00624 Saccharomyces mikatae SBML MML
dspd00624 (Undocumented) SBML MML
dsy00624 Desulfitobacterium hafniense Y51 SBML MML
dtni00624 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00624 (Undocumented) SBML MML
dvl00624 Desulfovibrio vulgaris DP4 SBML MML
dvu00624 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00624 (Undocumented) SBML MML
eacp00624 (Undocumented) SBML MML
eath00624 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00624 Aromatoleum aromaticum EbN1 SBML MML
ebna00624 Brassica napus (rape) (EST) SBML MML
ebvl00624 Beta vulgaris (beet) (EST) SBML MML
eca00624 Erwinia carotovora SBML MML
ecan00624 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00624 Escherichia coli CFT073 (UPEC) SBML MML
ecd00624 Escherichia coli K-12 DH10B SBML MML
ece00624 Escherichia coli O157 EDL933 (EHEC) SBML MML
ech00624 Ehrlichia chaffeensis SBML MML
eci00624 Escherichia coli UTI89 (UPEC) SBML MML
ecj00624 Escherichia coli K-12 W3110 SBML MML
ecl00624 Escherichia coli ATCC 8739 SBML MML
ecm00624 Escherichia coli SECEC SBML MML
ecn00624 Ehrlichia canis SBML MML
eco00624 Escherichia coli K-12 MG1655 SBML MML
ecp00624 Escherichia coli 536 (UPEC) SBML MML
ecs00624 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00624 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00624 Ciona savignyi (EST) SBML MML
ecv00624 Escherichia coli APEC O1 SBML MML
ecw00624 Escherichia coli E24377A SBML MML
ecx00624 Escherichia coli HS SBML MML
eees00624 Euphorbia esula (leafy spurge) (EST) SBML MML
efa00624 Enterococcus faecalis SBML MML
efar00624 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00624 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00624 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00624 Glycine max (soybean) (EST) SBML MML
egra00624 Gossypium raimondii (EST) SBML MML
ehan00624 Helianthus annuus (sunflower) (EST) SBML MML
ehi00624 Entamoeba histolytica SBML MML
ehvu00624 Hordeum vulgare (barley) (EST) SBML MML
eini00624 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00624 Erythrobacter litoralis SBML MML
elja00624 Lotus japonicus (lotus) (EST) SBML MML
elpe00624 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00624 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00624 Lactuca sativa (lettuce) (EST) SBML MML
elvi00624 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00624 Manihot esculenta (cassava) (EST) SBML MML
emte00624 Molgula tectiformis (EST) SBML MML
emtr00624 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00624 Nicotiana benthamiana (EST) SBML MML
ent00624 Enterobacter sp. 638 SBML MML
enta00624 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00624 Oryza sativa (rice) (EST) SBML MML
eosi00624 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00624 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00624 Picea glauca (white spruce) (EST) SBML MML
epop00624 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00624 (Undocumented) SBML MML
eppi00624 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00624 Physcomitrella patens subsp. patens (EST) SBML MML
epps00624 Prunus persica (peach) (EST) SBML MML
epsi00624 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00624 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00624 Populus tremula (European aspen) (EST) SBML MML
eru00624 Ehrlichia ruminantium Welgevonden (South Africa) SBML MML
erw00624 Ehrlichia ruminantium Welgevonden (France) SBML MML
esa00624 Enterobacter sakazakii SBML MML
esbi00624 Sorghum bicolor (sorghum) (EST) SBML MML
esi00624 Exiguobacterium sibiricum SBML MML
esja00624 Schistosoma japonicum (fluke) (EST) SBML MML
esly00624 Solanum lycopersicum (tomato) (EST) SBML MML
esof00624 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00624 (Undocumented) SBML MML
espu00624 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00624 Solanum tuberosum (potato) (EST) SBML MML
eta00624 Erwinia tasmaniensis SBML MML
etae00624 Triticum aestivum (wheat) (EST) SBML MML
evvi00624 Vitis vinifera (wine grape) (EST) SBML MML
ezel00624 (Undocumented) SBML MML
ezma00624 Zea mays (maize) (EST) SBML MML
fal00624 Frankia alni SBML MML
fgr00624 Fusarium graminearum SBML MML
fjo00624 Flavobacterium johnsoniae SBML MML
fma00624 Finegoldia magna SBML MML
fno00624 Fervidobacterium nodosum SBML MML
fnu00624 Fusobacterium nucleatum SBML MML
fph00624 Francisella philomiragia SBML MML
fps00624 Flavobacterium psychrophilum SBML MML
fra00624 Frankia sp. CcI3 SBML MML
fre00624 Frankia sp. EAN1pec SBML MML
fta00624 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00624 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00624 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00624 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00624 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00624 Francisella tularensis subsp. novicida U112 SBML MML
ftu00624 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00624 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00624 Granulobacter bethesdensis SBML MML
gdi00624 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00624 Gramella forsetii SBML MML
gga00624 Gallus gallus (chicken) SBML MML
gka00624 Geobacillus kaustophilus SBML MML
gla00624 Giardia lamblia SBML MML
glo00624 Geobacter lovleyi SBML MML
gme00624 Geobacter metallireducens SBML MML
gox00624 Gluconobacter oxydans SBML MML
gsu00624 Geobacter sulfurreducens SBML MML
gur00624 Geobacter uraniumreducens SBML MML
gvi00624 Gloeobacter violaceus SBML MML
hal00624 Halobacterium sp. NRC-1 SBML MML
har00624 Herminiimonas arsenicoxydans SBML MML
hau00624 Herpetosiphon aurantiacus SBML MML
hch00624 Hahella chejuensis SBML MML
hha00624 Halorhodospira halophila SBML MML
hhe00624 Helicobacter hepaticus SBML MML
hin00624 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hma00624 Haloarcula marismortui SBML MML
hmo00624 Heliobacterium modesticaldum SBML MML
hne00624 Hyphomonas neptunium SBML MML
hpa00624 Helicobacter pylori HPAG1 SBML MML
hsa00624 Homo sapiens (human) SBML MML
hsl00624 Halobacterium salinarum R1 SBML MML
hso00624 Haemophilus somnus 129PT SBML MML
hwa00624 Haloquadratum walsbyi SBML MML
iho00624 Ignicoccus hospitalis SBML MML
ilo00624 Idiomarina loihiensis SBML MML
jan00624 Jannaschia sp. CCS1 SBML MML
kcr00624 Candidatus Korarchaeum cryptofilum SBML MML
kla00624 Kluyveromyces lactis SBML MML
kpn00624 Klebsiella pneumoniae SBML MML
kra00624 Kineococcus radiotolerans SBML MML
krh00624 Kocuria rhizophila SBML MML
lac00624 Lactobacillus acidophilus SBML MML
lbc00624 Laccaria bicolor SBML MML
lbf00624 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00624 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbr00624 Lactobacillus brevis SBML MML
lbu00624 Lactobacillus delbrueckii ATCC BAA-365 SBML MML
lca00624 Lactobacillus casei ATCC 334 SBML MML
lch00624 Leptothrix cholodnii SBML MML
lci00624 Leuconostoc citreum SBML MML
lfe00624 Lactobacillus fermentum SBML MML
lga00624 Lactobacillus gasseri SBML MML
lhe00624 Lactobacillus helveticus SBML MML
lic00624 Leptospira interrogans serovar Copenhageni SBML MML
lil00624 Leptospira interrogans serovar lai SBML MML
lin00624 Listeria innocua SBML MML
ljo00624 Lactobacillus johnsonii SBML MML
lla00624 Lactococcus lactis subsp. lactis IL1403 SBML MML
llc00624 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00624 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00624 Leishmania major SBML MML
lme00624 Leuconostoc mesenteroides SBML MML
lmf00624 Listeria monocytogenes F2365 SBML MML
lmo00624 Listeria monocytogenes EGD-e SBML MML
lpc00624 Legionella pneumophila Corby SBML MML
lpf00624 Legionella pneumophila Lens SBML MML
lpl00624 Lactobacillus plantarum WCFS1 SBML MML
lpn00624 Legionella pneumophila Philadelphia 1 SBML MML
lpp00624 Legionella pneumophila Paris SBML MML
lre00624 Lactobacillus reuteri DSM 20016 SBML MML
lsa00624 Lactobacillus sakei SBML MML
lsl00624 Lactobacillus salivarius SBML MML
lsp00624 Lysinibacillus sphaericus SBML MML
lwe00624 Listeria welshimeri SLCC5334 SBML MML
lxx00624 Leifsonia xyli xyli CTCB07 SBML MML
maa00624 Mycoplasma agalactiae SBML MML
mab00624 Mycobacterium abscessus ATCC 19977T SBML MML
mac00624 Methanosarcina acetivorans SBML MML
mae00624 Methanococcus aeolicus SBML MML
mag00624 Magnetospirillum magneticum SBML MML
maq00624 Marinobacter aquaeolei SBML MML
mar00624 Microcystis aeruginosa SBML MML
mav00624 Mycobacterium avium 104 SBML MML
mba00624 Methanosarcina barkeri SBML MML
mbb00624 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00624 Mycobacterium bovis AF2122/97 SBML MML
mbr00624 Monosiga brevicollis SBML MML
mbu00624 Methanococcoides burtonii SBML MML
mca00624 Methylococcus capsulatus SBML MML
mcc00624 Macaca mulatta (rhesus monkey) SBML MML
mdo00624 Monodelphis domestica (opossum) SBML MML
mes00624 Mesorhizobium sp. BNC1 SBML MML
met00624 Methylobacterium sp. 4-46 SBML MML
mex00624 Methylobacterium extorquens SBML MML
mfa00624 Methylobacillus flagellatus SBML MML
mge00624 Mycoplasma genitalium SBML MML
mgi00624 Mycobacterium gilvum SBML MML
mgl00624 Malassezia globosa SBML MML
mgm00624 Magnetococcus sp. MC-1 SBML MML
mgr00624 Magnaporthe grisea SBML MML
mja00624 Methanococcus jannaschii SBML MML
mjl00624 Mycobacterium sp. JLS SBML MML
mka00624 Methanopyrus kandleri SBML MML
mkm00624 Mycobacterium sp. KMS SBML MML
mle00624 Mycobacterium leprae TN SBML MML
mlo00624 Mesorhizobium loti SBML MML
mma00624 Methanosarcina mazei SBML MML
mmc00624 Mycobacterium sp. MCS SBML MML
mmi00624 Mycobacterium marinum M SBML MML
mmp00624 Methanococcus maripaludis S2 SBML MML
mmr00624 Maricaulis maris SBML MML
mms00624 Minibacterium massiliensis SBML MML
mmu00624 Mus musculus (mouse) SBML MML
mmw00624 Marinomonas sp. MWYL1 SBML MML
mmx00624 Methanococcus maripaludis C6 SBML MML
mmz00624 Methanococcus maripaludis C7 SBML MML
mpa00624 Mycobacterium avium paratuberculosis SBML MML
mpe00624 Mycoplasma penetrans SBML MML
mpt00624 Methylibium petroleiphilum SBML MML
mra00624 Mycobacterium tuberculosis H37Ra SBML MML
mrd00624 Methylobacterium radiotolerans SBML MML
mse00624 Metallosphaera sedula SBML MML
msi00624 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00624 Mycobacterium smegmatis SBML MML
mst00624 Methanosphaera stadtmanae SBML MML
msu00624 Mannheimia succiniciproducens SBML MML
mta00624 Moorella thermoacetica SBML MML
mtc00624 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00624 Mycobacterium tuberculosis F11 SBML MML
mth00624 Methanobacterium thermoautotrophicum SBML MML
mtu00624 Mycobacterium tuberculosis H37Rv SBML MML
mul00624 Mycobacterium ulcerans SBML MML
mva00624 Mycobacterium vanbaalenii SBML MML
mvn00624 Methanococcus vannielii SBML MML
mxa00624 Myxococcus xanthus SBML MML
nar00624 Novosphingobium aromaticivorans SBML MML
nca00624 Nocardioides sp. JS614 SBML MML
ncr00624 Neurospora crassa SBML MML
net00624 Nitrosomonas eutropha SBML MML
neu00624 Nitrosomonas europaea SBML MML
nfa00624 Nocardia farcinica SBML MML
ngo00624 Neisseria gonorrhoeae SBML MML
nha00624 Nitrobacter hamburgensis SBML MML
nma00624 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00624 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00624 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00624 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmr00624 Nitrosopumilus maritimus SBML MML
nmu00624 Nitrosospira multiformis SBML MML
noc00624 Nitrosococcus oceani SBML MML
nph00624 Natronomonas pharaonis SBML MML
npu00624 Nostoc punctiforme SBML MML
nve00624 Nematostella vectensis (sea anemone) SBML MML
nwi00624 Nitrobacter winogradskyi SBML MML
oaa00624 Ornithorhynchus anatinus (platypus) SBML MML
oan00624 Ochrobactrum anthropi SBML MML
oih00624 Oceanobacillus iheyensis SBML MML
olu00624 Ostreococcus lucimarinus SBML MML
ooe00624 Oenococcus oeni SBML MML
osa00624 Oryza sativa japonica (Japanese rice) SBML MML
ote00624 Opitutus terrae SBML MML
pac00624 Propionibacterium acnes SBML MML
pae00624 Pseudomonas aeruginosa PAO1 SBML MML
pai00624 Pyrobaculum aerophilum SBML MML
pan00624 Podospora anserina SBML MML
pap00624 Pseudomonas aeruginosa PA7 SBML MML
par00624 Psychrobacter arcticum SBML MML
pas00624 Pyrobaculum arsenaticum SBML MML
pat00624 Pseudoalteromonas atlantica SBML MML
pau00624 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00624 Pelobacter carbinolicus SBML MML
pcl00624 Pyrobaculum calidifontis SBML MML
pcr00624 Psychrobacter cryohalolentis SBML MML
pde00624 Paracoccus denitrificans SBML MML
pdi00624 Parabacteroides distasonis SBML MML
pen00624 Pseudomonas entomophila SBML MML
pfa00624 Plasmodium falciparum 3D7 SBML MML
pfl00624 Pseudomonas fluorescens Pf-5 SBML MML
pfo00624 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00624 Pyrococcus furiosus SBML MML
pgi00624 Porphyromonas gingivalis W83 SBML MML
pgn00624 Porphyromonas gingivalis ATCC 33277 SBML MML
pha00624 Pseudoalteromonas haloplanktis SBML MML
pho00624 Pyrococcus horikoshii SBML MML
pic00624 Pichia stipitis SBML MML
pin00624 Psychromonas ingrahamii SBML MML
pis00624 Pyrobaculum islandicum SBML MML
pla00624 Parvibaculum lavamentivorans SBML MML
plu00624 Photorhabdus luminescens SBML MML
pmb00624 Prochlorococcus marinus AS9601 SBML MML
pmg00624 Prochlorococcus marinus MIT 9301 SBML MML
pmo00624 Petrotoga mobilis SBML MML
pmu00624 Pasteurella multocida SBML MML
pmy00624 Pseudomonas mendocina SBML MML
pna00624 Polaromonas naphthalenivorans SBML MML
pne00624 Polynucleobacter necessarius SBML MML
pnu00624 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00624 Polaromonas sp. JS666 SBML MML
ppd00624 Pelobacter propionicus SBML MML
ppf00624 Pseudomonas putida F1 SBML MML
ppg00624 Pseudomonas putida GB-1 SBML MML
ppp00624 Physcomitrella patens subsp. patens SBML MML
ppr00624 Photobacterium profundum SBML MML
ppu00624 Pseudomonas putida KT2440 SBML MML
ppw00624 Pseudomonas putida W619 SBML MML
prw00624 Psychrobacter sp. PRwf-1 SBML MML
psa00624 Pseudomonas stutzeri SBML MML
psb00624 Pseudomonas syringae pv. syringae B728a SBML MML
psp00624 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00624 Pseudomonas syringae pv. tomato DC3000 SBML MML
pth00624 Pelotomaculum thermopropionicum SBML MML
pto00624 Picrophilus torridus SBML MML
ptr00624 Pan troglodytes (chimpanzee) SBML MML
pub00624 Candidatus Pelagibacter ubique SBML MML
pvi00624 Prosthecochloris vibrioformis SBML MML
pyo00624 Plasmodium yoelii SBML MML
rba00624 Rhodopirellula baltica SBML MML
rbe00624 Rickettsia bellii RML369-C SBML MML
rbo00624 Rickettsia bellii OSU 85-389 SBML MML
rca00624 Roseiflexus castenholzii DSM13941 SBML MML
rci00624 Uncultured methanogenic archaeon RC-I SBML MML
rde00624 Roseobacter denitrificans SBML MML
rec00624 Rhizobium etli CIAT 652 SBML MML
reh00624 Ralstonia eutropha H16 SBML MML
ret00624 Rhizobium etli CFN 42 SBML MML
reu00624 Ralstonia eutropha JMP134 SBML MML
rfe00624 Rickettsia felis SBML MML
rfr00624 Rhodoferax ferrireducens SBML MML
rha00624 Rhodococcus sp. RHA1 SBML MML
rle00624 Rhizobium leguminosarum SBML MML
rme00624 Ralstonia metallidurans SBML MML
rno00624 Rattus norvegicus (rat) SBML MML
rpa00624 Rhodopseudomonas palustris CGA009 SBML MML
rpb00624 Rhodopseudomonas palustris HaA2 SBML MML
rpc00624 Rhodopseudomonas palustris BisB18 SBML MML
rpd00624 Rhodopseudomonas palustris BisB5 SBML MML
rpe00624 Rhodopseudomonas palustris BisA53 SBML MML
rpt00624 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00624 Roseiflexus sp. RS-1 SBML MML
rru00624 Rhodospirillum rubrum SBML MML
rsa00624 Renibacterium salmoninarum SBML MML
rso00624 Ralstonia solanacearum SBML MML
rsp00624 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00624 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00624 Rubrobacter xylanophilus SBML MML
saa00624 Staphylococcus aureus USA300 SBML MML
sab00624 Staphylococcus aureus RF122 SBML MML
sac00624 Staphylococcus aureus COL SBML MML
sae00624 Staphylococcus aureus Newman SBML MML
sag00624 Streptococcus agalactiae 2603 (serotype V) SBML MML
sah00624 Staphylococcus aureus JH1 SBML MML
sai00624 Sulfolobus acidocaldarius SBML MML
saj00624 Staphylococcus aureus JH9 SBML MML
sak00624 Streptococcus agalactiae A909 (serotype Ia) SBML MML
sam00624 Staphylococcus aureus MW2 SBML MML
san00624 Streptococcus agalactiae NEM316 (serotype III) SBML MML
sao00624 Staphylococcus aureus NCTC8325 SBML MML
saq00624 Salinispora arenicola SBML MML
sar00624 Staphylococcus aureus MRSA252 SBML MML
sas00624 Staphylococcus aureus MSSA476 SBML MML
sat00624 Syntrophus aciditrophicus SBML MML
sau00624 Staphylococcus aureus N315 SBML MML
sav00624 Staphylococcus aureus Mu50 SBML MML
saw00624 Staphylococcus aureus Mu3 SBML MML
sax00624 Staphylococcus aureus USA300 TCH1516 SBML MML
saz00624 Shewanella amazonensis SBML MML
sbc00624 Shigella boydii CDC 3083-94 SBML MML
sbl00624 Shewanella baltica OS155 SBML MML
sbm00624 Shewanella baltica OS185 SBML MML
sbn00624 Shewanella baltica OS195 SBML MML
sbo00624 Shigella boydii Sb227 SBML MML
sce00624 Saccharomyces cerevisiae SBML MML
scl00624 Sorangium cellulosum SBML MML
sco00624 Streptomyces coelicolor SBML MML
sdn00624 Shewanella denitrificans SBML MML
sdy00624 Shigella dysenteriae SBML MML
sec00624 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00624 Saccharopolyspora erythraea SBML MML
sep00624 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00624 Staphylococcus epidermidis RP62A SBML MML
ses00624 Salmonella enterica subsp. arizonae SBML MML
sfl00624 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00624 Shewanella frigidimarina SBML MML
sfv00624 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00624 Shigella flexneri 2457T (serotype 2a) SBML MML
sgl00624 Sodalis glossinidius SBML MML
sgo00624 Streptococcus gordonii SBML MML
sgr00624 Streptomyces griseus SBML MML
sha00624 Staphylococcus haemolyticus SBML MML
she00624 Shewanella sp. MR-4 SBML MML
shl00624 Shewanella halifaxensis SBML MML
shm00624 Shewanella sp. MR-7 SBML MML
shn00624 Shewanella sp. ANA-3 SBML MML
shw00624 Shewanella sp. W3-18-1 SBML MML
sil00624 Ruegeria pomeroyi SBML MML
sit00624 Silicibacter sp. TM1040 SBML MML
slo00624 Shewanella loihica SBML MML
sma00624 Streptomyces avermitilis SBML MML
smd00624 Sinorhizobium medicae SBML MML
sme00624 Sinorhizobium meliloti SBML MML
sml00624 Stenotrophomonas maltophilia SBML MML
smr00624 Staphylothermus marinus SBML MML
smu00624 Streptococcus mutans SBML MML
son00624 Shewanella oneidensis SBML MML
spa00624 Streptococcus pyogenes MGAS10394 (serotype M6) SBML MML
spb00624 Streptococcus pyogenes MGAS6180 (serotype M28) SBML MML
spc00624 Shewanella putrefaciens SBML MML
spd00624 Streptococcus pneumoniae D39 SBML MML
spe00624 Serratia proteamaculans SBML MML
spf00624 Streptococcus pyogenes Manfredo (serotype M5) SBML MML
spg00624 Streptococcus pyogenes MGAS315 (serotype M3) SBML MML
sph00624 Streptococcus pyogenes MGAS10270 (serotype M2) SBML MML
spi00624 Streptococcus pyogenes MGAS10750 (serotype M4) SBML MML
spj00624 Streptococcus pyogenes MGAS2096 (serotype M12) SBML MML
spk00624 Streptococcus pyogenes MGAS9429 (serotype M12) SBML MML
spl00624 Shewanella pealeana SBML MML
spm00624 Streptococcus pyogenes MGAS8232 (serotype M18) SBML MML
spn00624 Streptococcus pneumoniae TIGR4 SBML MML
spo00624 Schizosaccharomyces pombe SBML MML
spq00624 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00624 Streptococcus pneumoniae R6 SBML MML
sps00624 Streptococcus pyogenes SSI-1 (serotype M3) SBML MML
spt00624 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00624 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spv00624 Streptococcus pneumoniae Hungary19A 6 SBML MML
spw00624 Streptococcus pneumoniae CGSP14 (serotype 14) SBML MML
spy00624 Streptococcus pyogenes SF370 (serotype M1) SBML MML
spz00624 Streptococcus pyogenes MGAS5005 (serotype M1) SBML MML
sru00624 Salinibacter ruber SBML MML
ssa00624 Streptococcus sanguinis SBML MML
ssc00624 Sus scrofa (pig) SBML MML
sse00624 Shewanella sediminis SBML MML
ssn00624 Shigella sonnei SBML MML
sso00624 Sulfolobus solfataricus SBML MML
ssp00624 Staphylococcus saprophyticus SBML MML
ssu00624 Streptococcus suis 05ZYH33 SBML MML
ssv00624 Streptococcus suis 98HAH33 SBML MML
stc00624 Streptococcus thermophilus CNRZ1066 SBML MML
ste00624 Streptococcus thermophilus LMD-9 SBML MML
sth00624 Symbiobacterium thermophilum SBML MML
stl00624 Streptococcus thermophilus LMG18311 SBML MML
stm00624 Salmonella typhimurium LT2 SBML MML
sto00624 Sulfolobus tokodaii SBML MML
stp00624 Salinispora tropica SBML MML
stt00624 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00624 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sus00624 Solibacter usitatus SBML MML
swd00624 Shewanella woodyi ATCC 51908 SBML MML
swi00624 Sphingomonas wittichii SBML MML
syc00624 Synechococcus elongatus PCC6301 SBML MML
syf00624 Synechococcus elongatus PCC7942 SBML MML
syg00624 Synechococcus sp. CC9311 SBML MML
syn00624 Synechocystis sp. PCC6803 SBML MML
syp00624 Synechococcus sp. PCC7002 SBML MML
tac00624 Thermoplasma acidophilum SBML MML
tan00624 Theileria annulata SBML MML
tbd00624 Thiobacillus denitrificans SBML MML
tbr00624 Trypanosoma brucei SBML MML
tca00624 Tribolium castaneum (red flour beetle) SBML MML
tcr00624 Trypanosoma cruzi SBML MML
tcx00624 Thiomicrospira crunogena SBML MML
tel00624 Thermosynechococcus elongatus SBML MML
ter00624 Trichodesmium erythraeum SBML MML
tet00624 Tetrahymena thermophila SBML MML
tex00624 Thermoanaerobacter sp. X514 SBML MML
tfu00624 Thermobifida fusca SBML MML
tko00624 Thermococcus kodakaraensis SBML MML
tle00624 Thermotoga lettingae SBML MML
tma00624 Thermotoga maritima SBML MML
tme00624 Thermosipho melanesiensis SBML MML
tne00624 Thermoproteus neutrophilus SBML MML
tpd00624 Thermoanaerobacter pseudethanolicus SBML MML
tpe00624 Thermofilum pendens SBML MML
tpt00624 Thermotoga petrophila SBML MML
tpv00624 Theileria parva SBML MML
trq00624 Thermotoga sp. RQ2 SBML MML
tte00624 Thermoanaerobacter tengcongensis SBML MML
tth00624 Thermus thermophilus HB27 SBML MML
ttj00624 Thermus thermophilus HB8 SBML MML
tva00624 Trichomonas vaginalis SBML MML
tvo00624 Thermoplasma volcanium SBML MML
twh00624 Tropheryma whipplei Twist SBML MML
tws00624 Tropheryma whipplei TW08/27 SBML MML
uma00624 Ustilago maydis SBML MML
vch00624 Vibrio cholerae O1 SBML MML
vco00624 Vibrio cholerae O395 SBML MML
vei00624 Verminephrobacter eiseniae SBML MML
vfi00624 Vibrio fischeri SBML MML
vha00624 Vibrio harveyi SBML MML
vpa00624 Vibrio parahaemolyticus SBML MML
vpo00624 Vanderwaltozyma polyspora SBML MML
vvu00624 Vibrio vulnificus CMCP6 SBML MML
vvy00624 Vibrio vulnificus YJ016 SBML MML
wsu00624 Wolinella succinogenes SBML MML
xac00624 Xanthomonas axonopodis SBML MML
xau00624 Xanthobacter autotrophicus SBML MML
xcb00624 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00624 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00624 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00624 Xylella fastidiosa 9a5c SBML MML
xfm00624 Xylella fastidiosa M12 SBML MML
xfn00624 Xylella fastidiosa M23 SBML MML
xft00624 Xylella fastidiosa Temecula1 SBML MML
xla00624 Xenopus laevis (African clawed frog) SBML MML
xom00624 Xanthomonas oryzae MAFF311018 SBML MML
xoo00624 Xanthomonas oryzae KACC10331 SBML MML
xtr00624 Xenopus tropicalis (western clawed frog) SBML MML
yen00624 Yersinia enterocolitica SBML MML
yli00624 Yarrowia lipolytica SBML MML
ypa00624 Yersinia pestis Antiqua SBML MML
ype00624 Yersinia pestis CO92 SBML MML
ypg00624 Yersinia pestis Angola SBML MML
ypi00624 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00624 Yersinia pestis KIM SBML MML
ypm00624 Yersinia pestis Mediaevails SBML MML
ypn00624 Yersinia pestis Nepal516 SBML MML
ypp00624 Yersinia pestis Pestoides SBML MML
yps00624 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00624 Yersinia pseudotuberculosis YPIII SBML MML
zmo00624 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.