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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Tracers in physiological systems modeling

Authors: Anderson JC and Bassingthwaighte JB, 2007


Metabolic events within cells are intimately linked with the external influences of substrate delivery and metabolite removal. These influences include the level of cellular activity, the local blood flow, transmembrane transport rates, and humoral and neural regulation of receptors and reaction rates. The question "What are the basic principles that the developers of tracer models should use?" evokes discussion on the scope of the modeling: an extremes is "minimal modeling", wherein one considers only the observations of the injected tracer-labelled solute itself (as in pharmacokinetics), its reaction products, or extend to its effects on the physiology (as in pharmacodynamics).
Minimal modeling can work for classification or diagnosis but, unless the model has the depth to encompass mechanisms of tracer handling, doesn't often provide an explanation. Here we advocate adherence to a broad set of principles for the design and application of models to the understanding of physiological systems: (1) consider the anatomy (a biological constraint) as an essential part of the data, (2) take into account the background physiological state of the subject (biochemical, thermodynamic constraints), (3) consider the processes that the tracer labelled solutes undergo (mechanisms of transport and reaction), (4) be obedient to the laws of physics and chemistry (conservation principles for mass, energy, charge, momentum, etc.), and (5) adhere to a set of modeling standards allowing reproducibility and dissemination of the model. A two compartment model with a binding site illustrates that recognition of the anatomic constraints would foster a better understanding of the system kinetics. Another example is to abandon the lumped compartmental representation of spatially extended capillary-tissue exchange in favor of using anatomic-based equations, thereby obtaining physically meaningful esxtimates of parameter values.

For more detailed information, see: Tracers in physiological systems modeling (pdf format):

Anderson JC and Bassingthwaighte JB: "Tracers in physiological systems modeling". In: Mathematical Modeling in Nutrition and Agriculture. Proc 9th International Conf on Mathematical Modeling in Nutrition, Roanoke, VA, August 14-17, 2006, edited by Mark D. Hanigan JN and Casey L Marsteller. Virginia Polytechnic Institute and State University, Blacksburg, VA 2007, pp 125-159.

Return to Compartmental Models Tutorial

Related Models

Models used to produce figures in Anderson JC 2007 paper.

Two compartment model discussion:

Three region serial tank and axial dispersion model discussion:


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Key Terms

tracer, tracee, metabolic physiologic modeling, lumped compartmental versus spatially distributed systems, capillary-tissue exchange, membrane transporters, enzyme reactions, steady state versus transient states.


Please cite in any publication for which this software is used and send one reprint to the address given below:
The National Simulation Resource, Director J. B. Bassingthwaighte, Department of Bioengineering, University of Washington, Seattle WA 98195-5061.

[This page was last modified 02Nov16, 2:20 pm.]

Model development and archiving support at provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.